Pairwise Alignments

Query, 254 a.a., transporter substrate-binding domain-containing protein from Methanococcus maripaludis JJ

Subject, 261 a.a., lysine / arginine / ornithine ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score = 88.6 bits (218), Expect = 1e-22
 Identities = 67/251 (26%), Positives = 120/251 (47%), Gaps = 15/251 (5%)

Query: 11  LLFLLSISIISGCISSQNTMKRGTLTVGVCAQYPPTIYEE-NGNLAGFDFDLMNEIAKRM 69
           LL  L++S+ S  + SQ   K   L +G+ A YPP  +++ +G++AGFD+D+ N + + M
Sbjct: 6   LLGALALSVFS--LVSQAAEK--PLKIGIEAAYPPFAFKQPDGSIAGFDYDIGNALCEEM 61

Query: 70  KLNTNFKIYNSKSELFDALEKNEVDCI-GSRTVNYERRKFIDFTRVYYYDSVRVAVPESS 128
           K    + +      L  AL+  ++D I  S ++  +R+K +DFT+ YY    R+ + + +
Sbjct: 62  KTKCTW-VEQEFDGLIPALKVRKIDAILSSMSITDDRKKSVDFTKRYYLTPARLVMKDGT 120

Query: 129 SVT-MLKELKGKNLGVIEGSVSSELVESYLTNVGCKCIYYDTPENLTYAVENGEVDAVIG 187
           +V+  L ELKGK +GV  GS+     +  L   G   + Y T   +   V  G +D  + 
Sbjct: 121 TVSDSLDELKGKKIGVQRGSIHDRFAKEVLGAKGATVVPYGTQNEIYLDVAAGRLDGTVA 180

Query: 188 HEMYIEHISTKCNVQK-------RYLDEKLSVSYWAIPINKNNPNLRNSINDVLLEMEND 240
               +E    K +  K        + D K       I + K +    + IN  +  +  +
Sbjct: 181 DATLLEDGFLKTDAGKGFAFVGPAFTDAKYFGDGIGIAVRKGDKANVDRINAAIDAIRAN 240

Query: 241 GTLDELKLKWY 251
           G   E++ K++
Sbjct: 241 GKYKEIESKYF 251