Pairwise Alignments
Query, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ
Subject, 684 a.a., Ion-translocating oxidoreductase complex subunit B from Azospirillum sp. SherDot2
Score = 53.5 bits (127), Expect = 2e-11
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 15/86 (17%)
Query: 286 GKILYDPKTCTLCNTCVKECPQGVRINKG-----GFVDGGCVLCEVCIKECPEDAISI-- 338
G++ D + CTLC +CV CP G ++ F CV C +C CPE IS+
Sbjct: 513 GRVSVDVEGCTLCLSCVGACPTGALLDNADKPMLSFAQDACVQCGLCKTTCPEKVISLVP 572
Query: 339 ----KERSKFTSIDKKE----CIACG 356
++R++ ++ K+E C++CG
Sbjct: 573 EIDFRDRARGAAVVKEEEPFCCVSCG 598
Score = 45.1 bits (105), Expect = 8e-09
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 320 GCVLCEVCIKECPEDAISIKERSKFTSIDKKECIACGTCSMVCPNDAITVKIDSLNFSGN 379
GC LC C+ CP A+ S + C+ CG C CP I++ + ++F
Sbjct: 521 GCTLCLSCVGACPTGALLDNADKPMLSFAQDACVQCGLCKTTCPEKVISL-VPEIDFRDR 579
Query: 380 KVHSEVIFNDNCVLCEKC 397
+ V+ + C C
Sbjct: 580 ARGAAVVKEEEPFCCVSC 597
Score = 43.9 bits (102), Expect = 2e-08
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 245 EISEFKVVKTKEDVKANPEKHCINCGLCVDKCPSNALRFENGKILYDPKTCTLCNTCVKE 304
E + + V K D+ A+ C C+D CP+ A+ + DP C C +C
Sbjct: 263 EFEKPRFVDFKADLCAHSRSRKTGCTRCLDVCPTGAITPNGDHVAIDPHVCAGCGSCAAV 322
Query: 305 CPQG 308
CP G
Sbjct: 323 CPTG 326
Score = 41.6 bits (96), Expect = 9e-08
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 11/77 (14%)
Query: 45 CITCGTCAKECPTGAIKKN-EYGGYYVNRKLCTGCGICKNACP------IDIIDIREDST 97
C C +C CPTGA+ N + + C CG+CK CP + ID R+ +
Sbjct: 522 CTLCLSCVGACPTGALLDNADKPMLSFAQDACVQCGLCKTTCPEKVISLVPEIDFRDRAR 581
Query: 98 G----KAYPTGMCVMCG 110
G K CV CG
Sbjct: 582 GAAVVKEEEPFCCVSCG 598
Score = 40.8 bits (94), Expect = 1e-07
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 65 YGGYYVNRKLCTGCGICKNACPIDIIDIREDSTGKAYPTGMCVMCGLCTTECP 117
+G V+ + CT C C ACP + D ++ CV CGLC T CP
Sbjct: 512 FGRVSVDVEGCTLCLSCVGACPTGALLDNADKPMLSFAQDACVQCGLCKTTCP 564
Score = 39.3 bits (90), Expect = 4e-07
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 10/53 (18%)
Query: 15 CENCKSKEI--SKCMEVCPTNAIK------MIDGKAFSCITCGTCAKECPTGA 59
C + +S++ ++C++VCPT AI ID C CG+CA CPTGA
Sbjct: 277 CAHSRSRKTGCTRCLDVCPTGAITPNGDHVAIDPHV--CAGCGSCAAVCPTGA 327
Score = 38.5 bits (88), Expect = 7e-07
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 10/104 (9%)
Query: 182 VECGKCIYVCPKDTIIEAEIVDGCTRCNICNEVCPVD-AIKYGEVT---ENCILCGNCIS 237
VE G + + PK T+ + EV P+ +G V+ E C LC +C+
Sbjct: 471 VEAGMFLPMGPKRTVTMLALRHLHKAAPAPVEVLPLPPGAPFGRVSVDVEGCTLCLSCVG 530
Query: 238 KCPKDALEISEFKVVKTKEDVKANPEKHCINCGLCVDKCPSNAL 281
CP AL + + + + + C+ CGLC CP +
Sbjct: 531 ACPTGAL------LDNADKPMLSFAQDACVQCGLCKTTCPEKVI 568
Score = 38.1 bits (87), Expect = 1e-06
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 324 CEVCIKECPEDAISIKERSKFTSIDKKECIACGTCSMVCPNDAIT 368
C C+ CP AI+ +ID C CG+C+ VCP A T
Sbjct: 287 CTRCLDVCPTGAIT--PNGDHVAIDPHVCAGCGSCAAVCPTGAAT 329
Score = 37.7 bits (86), Expect = 1e-06
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 174 ISIDSEKCVECGKCIYVCPKDTIIE-------AEIVDGCTRCNICNEVCPVDAI 220
+S+D E C C C+ CP +++ + D C +C +C CP I
Sbjct: 515 VSVDVEGCTLCLSCVGACPTGALLDNADKPMLSFAQDACVQCGLCKTTCPEKVI 568
Score = 36.6 bits (83), Expect = 3e-06
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 48 CGTCAKECPTGAIKKNEYGGYY-VNRKLCTGCGICKNACP 86
C C CPTGAI N G + ++ +C GCG C CP
Sbjct: 287 CTRCLDVCPTGAITPN--GDHVAIDPHVCAGCGSCAAVCP 324
Score = 36.2 bits (82), Expect = 4e-06
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 202 VDGCTRCNICNEVCPVDAI-------KYGEVTENCILCGNCISKCPKDAL----EISEFK 250
V+GCT C C CP A+ + C+ CG C + CP+ + EI
Sbjct: 519 VEGCTLCLSCVGACPTGALLDNADKPMLSFAQDACVQCGLCKTTCPEKVISLVPEIDFRD 578
Query: 251 VVKTKEDVKANPEKHCINCG 270
+ VK C++CG
Sbjct: 579 RARGAAVVKEEEPFCCVSCG 598
Score = 34.7 bits (78), Expect = 1e-05
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 71 NRKLCTGCGICKNACPIDIIDIREDSTGKAYPTGMCVMCGLCTTECPYNARLY-FDPSSL 129
+R TGC C + CP I D A +C CG C CP A Y P++
Sbjct: 280 SRSRKTGCTRCLDVCPTGAITPNGDHV--AIDPHVCAGCGSCAAVCPTGAATYALPPAAT 337
Query: 130 KNTKNKMLMERY 141
+ + L+ Y
Sbjct: 338 VYERLRTLLSTY 349
Score = 33.5 bits (75), Expect = 2e-05
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 346 SIDKKECIACGTCSMVCPNDAITVKIDSLNFSGNKVHSEVIFNDNCVLCEKCAIHCPRDV 405
S+D + C C +C CP A+ D S D CV C C CP V
Sbjct: 516 SVDVEGCTLCLSCVGACPTGALLDNADKPMLS--------FAQDACVQCGLCKTTCPEKV 567
Query: 406 I 406
I
Sbjct: 568 I 568
Score = 33.1 bits (74), Expect = 3e-05
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 10/51 (19%)
Query: 394 CEKCAIHCPRDVIENTSGYKKVVDPENSYIRVDDGYCVKCGLCTIICPNDA 444
C +C CP I P ++ +D C CG C +CP A
Sbjct: 287 CTRCLDVCPTGAIT----------PNGDHVAIDPHVCAGCGSCAAVCPTGA 327
Score = 32.7 bits (73), Expect = 4e-05
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 389 DNCVLCEKCAIHCPRDVIENTSGYKKVVDPENSYIRVDDGYCVKCGLCTIICPNDAI 445
+ C LC C CP + + + + + CV+CGLC CP I
Sbjct: 520 EGCTLCLSCVGACPTGALLDNA--------DKPMLSFAQDACVQCGLCKTTCPEKVI 568
Score = 30.8 bits (68), Expect = 2e-04
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 11/54 (20%)
Query: 13 EECENCKSKEISKCMEVCPTNAI------KMIDGKAFSCITCGTCAKECPTGAI 60
E C C S C+ CPT A+ M+ +C+ CG C CP I
Sbjct: 520 EGCTLCLS-----CVGACPTGALLDNADKPMLSFAQDACVQCGLCKTTCPEKVI 568
Score = 29.6 bits (65), Expect = 3e-04
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 18/50 (36%)
Query: 204 GCTRCNICNEVCPVDAIKYGEVTEN----------CILCGNCISKCPKDA 243
GCTRC +VCP G +T N C CG+C + CP A
Sbjct: 286 GCTRCL---DVCPT-----GAITPNGDHVAIDPHVCAGCGSCAAVCPTGA 327
Score = 28.1 bits (61), Expect = 0.001
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 232 CGNCISKCPKDALEISEFKVVKTKEDVKANPEKHCINCGLCVDKCPSNALRF 283
C C+ CP A + + V +P C CG C CP+ A +
Sbjct: 287 CTRCLDVCPTGA-------ITPNGDHVAIDPHV-CAGCGSCAAVCPTGAATY 330
Score = 27.3 bits (59), Expect = 0.002
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 174 ISIDSEKCVECGKCIYVCP 192
++ID C CG C VCP
Sbjct: 306 VAIDPHVCAGCGSCAAVCP 324
Score = 27.3 bits (59), Expect = 0.002
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 441 PNDAIDKGEITTERCEYCSACVNICPTRAI 470
P + + E C C +CV CPT A+
Sbjct: 508 PGAPFGRVSVDVEGCTLCLSCVGACPTGAL 537