Pairwise Alignments

Query, 253 a.a., ABC transporter permease from Methanococcus maripaludis JJ

Subject, 256 a.a., Efflux ABC transporter, permease protein from Sphingobium sp. HT1-2

 Score = 84.7 bits (208), Expect = 2e-21
 Identities = 65/246 (26%), Positives = 117/246 (47%), Gaps = 14/246 (5%)

Query: 3   AFSAMFYRQLRRFTRAKSRVLGSLLNPLVWLVFFGIGWSRAFDFPAAREIFGGVDYLTYL 62
           A +A++  +L RF R     L  LL P++    + I +  A      +    G+ Y  ++
Sbjct: 8   AVAAIYKFELHRFRRTW---LTGLLVPVITTSLYFIVFGGAIGSRMTQ--IDGIPYAAFI 62

Query: 63  IPGVVSMTVFSGSFISGVTVIWDKQF-GFLKETLVAPTSRSEAILGRIMGDSITALIQGV 121
           +PG++ M++F+ S  +    I+  +F G + E L AP S  E ++  +   +  ALI G 
Sbjct: 63  VPGLIMMSMFTESIFNASFGIYMPKFTGTIYELLSAPVSAMETVIAYVGAAATKALIVGF 122

Query: 122 LIMVLSLFLVSL---NPFGMIPVIFTSFILAVAFASVGISLGLKINSQEGFHLIFGLLMQ 178
           +I   +   V L   +PF M+  +    ++AV+F   G  LG+     E   +I  L++ 
Sbjct: 123 IIFATAHLFVDLPVAHPFAMVGFML---LIAVSFCLFGFILGIWAQGFEQLQVIPLLIIT 179

Query: 179 PLIFLSGAFYPIDAMPTWMKILAYLNPLTYAVDSARYFLAGFSRFPIILDVSILIVLSVF 238
           P+ FL GAFY I  +    + +   NP+ Y +   R+    F +  + ++ S+L V  + 
Sbjct: 180 PMTFLGGAFYSIHMLAEPWRTITLFNPIVYLISGFRWTF--FGKGDVGIEFSLLFVGGML 237

Query: 239 LVVLAM 244
            V L +
Sbjct: 238 AVCLGI 243