Pairwise Alignments

Query, 216 a.a., DNA repair and recombination protein RadB from Methanococcus maripaludis JJ

Subject, 322 a.a., DNA repair and recombination protein RadA from Methanococcus maripaludis JJ

 Score = 64.3 bits (155), Expect = 2e-15
 Identities = 63/237 (26%), Positives = 114/237 (48%), Gaps = 31/237 (13%)

Query: 2   LEELLNGNIEKKTITQIYGPPGVGKTNI----CIISMLK---------AIEN---GKNVV 45
           L+ +L G IE +++T+  G  G GKT I    C+   ++          +E        V
Sbjct: 87  LDTVLAGGIESQSVTEFAGMFGSGKTQIMHQTCVNLQMREKIFADLEGVVEEELEAPKAV 146

Query: 46  YIDTEGSLSIERIKQL---SGKDCDELLKNIIIYEPSSFEEQSEALEKIFLL----ENVG 98
           YIDTEG+   ER+ Q+   +G D   +L N  +    + + Q    EKI  L     N+ 
Sbjct: 147 YIDTEGTFRPERVVQMAEGAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIKGGNNIK 206

Query: 99  LIIIDGIVSLYRLELCDKINENTKLNRMLGKQISNLLKVSRQKNSGILITNQV---KDSI 155
           L+IID + S +R E   +  +  +  + LG+ ++ L K++   N  +L+TNQV    D+ 
Sbjct: 207 LVIIDSLTSTFRNEFTGR-GKLAERQQKLGRHMATLNKLADLYNCIVLVTNQVAAKPDAY 265

Query: 156 NGI--EPAGGRLLEYWSKSIIKIEKSESIRKLT-LEKHRHAKEGENLRFKILQNGLE 209
            G+  +  GG ++ + +     + KS+  +++  L    H  + E + F+I + G++
Sbjct: 266 FGVAEQAIGGHVVGHAATFRFFLRKSKGDKRVAKLYDSPHLPDSEAV-FRITEKGIQ 321