Pairwise Alignments

Query, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis JJ

Subject, 945 a.a., excinuclease ABC subunit UvrA from Fusobacterium nucleatum SB010

 Score = 1076 bits (2783), Expect = 0.0
 Identities = 555/960 (57%), Positives = 716/960 (74%), Gaps = 33/960 (3%)

Query: 4   IIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYARQ 63
           I IKGAR+HNLKNI + LP+N  IV+TGVSGSGKS++AFDTIY+EGQRRYVESLSAYARQ
Sbjct: 5   ITIKGARQHNLKNIDIELPKNEFIVITGVSGSGKSSLAFDTIYSEGQRRYVESLSAYARQ 64

Query: 64  FLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYCPEH 123
           F+G MNKP+VDSIEGLSPAI+I+QKTT++NPRSTVGT+TE+YDYLRLL+A IG+ +CP  
Sbjct: 65  FIGQMNKPEVDSIEGLSPAISIEQKTTNRNPRSTVGTITEVYDYLRLLFAHIGVAHCPIC 124

Query: 124 NIRIESQSPEKIAEKIEEEFSE--TVTILSPIVRQKKGTYQKLFKDLNSEGFARIRVNGE 181
           +  +E QS ++I E +  +F +   + +L+PIV+ KKGT++ +F +L  +GF R RVNGE
Sbjct: 125 HTAVEKQSIDEIVESVMAKFDDGSKIILLAPIVKDKKGTHKNIFLNLFKKGFVRARVNGE 184

Query: 182 IYRTDDEITLERYKKHDIEIVIDRLTPKDD----HSRLVEACERALERSGGLLIVTGTKN 237
           I   +DEI L++ KKH IE+V+DRL  K D     SRL ++ E A + S G LIV    N
Sbjct: 185 ILYLEDEIELDKNKKHSIEVVVDRLVLKKDDKDFESRLTQSIETATDLSNGKLIV----N 240

Query: 238 NEEFEKIYSSNLACPIC-GISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLIIPDK 296
           + + + +YS N +CP    +S  EL PR+FSFN+P+GAC  C GLG K+E D + +I + 
Sbjct: 241 DGKHDYLYSENYSCPNHEDVSIPELNPRLFSFNAPYGACPECKGLGKKLEVDENKLIENP 300

Query: 297 NKCIADGAV----ALYRNFLDGYRSQHLAAVANHFGFTVLTPIKDLSKEQLDILMYGSPE 352
              I DG +    A+ R    GY  +   A+A      +  P+KDL+K++LDI+ YG  E
Sbjct: 301 ELSIEDGGMYIPGAMARK---GYSWEIFKAMAKAAKIDLTKPVKDLTKKELDIIFYGYDE 357

Query: 353 KIHFKVSNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELE-KFMKVSLCPKCGGK 411
           K  FK     GD ++   K +EG +    R Y E+ SE +++E+E ++M   +C  C GK
Sbjct: 358 K--FKFDYTGGDFDFHGYKEYEGAVKNLERRYYESFSEAQKEEIENRYMVERICKVCNGK 415

Query: 412 RLKDKALAVKIEDKSIIDLTDLSISKAEEFFNNLKLTDKEYEIAKQVIKEIKSRLKFLND 471
           RLKD+ LAV +  K+I+++ D+SI  + +FF N+KLT+K+ +IAK+++KEI+ RL F+ +
Sbjct: 416 RLKDEVLAVTVNGKNIMEICDMSIKNSLDFFMNMKLTEKQEKIAKEILKEIRERLTFMTN 475

Query: 472 VGLGYLTLSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLIETLH 531
           VGL YLTLSR + TLSGGE+QRIRLATQIGS LTGVLYVLDEPSIGLHQ+DN KL+ TL+
Sbjct: 476 VGLDYLTLSRETKTLSGGESQRIRLATQIGSGLTGVLYVLDEPSIGLHQKDNDKLLSTLN 535

Query: 532 KLRNLDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPTEISKNKDSLTGKYL 591
           +L+ L NTL+VVEHDEDT++ AD ++D+GPGAG  GG+VVA G+P EI KNK+S+TGK+L
Sbjct: 536 RLKELGNTLIVVEHDEDTMMQADKILDIGPGAGEFGGNVVAFGSPKEIMKNKNSITGKFL 595

Query: 592 SGELKIEIPKNRRKSDKFLKLSNCRQNNLKNVSVEIPTGVFNVITGVSGSGKSTLIYENL 651
           SG+ +IEIPK RRK  K +KL   + NNLKN+ VE P G+  V+TGVSGSGKSTL+   L
Sbjct: 596 SGKEEIEIPKKRRKWSKSIKLYGAKGNNLKNIDVEFPLGIMTVVTGVSGSGKSTLVNSTL 655

Query: 652 YPALKEKIKSEESVEELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPAT 711
           YP L  K+           + +LY    E   +E    ++KV+ IDQ+PIGRTPRSNPAT
Sbjct: 656 YPVLFNKLN----------KGKLYP--LEYGKIEGLDGLEKVINIDQTPIGRTPRSNPAT 703

Query: 712 YTKVFDKIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVEC 771
           YTK+FD IR +FAET++AK+ G+  GRFSFNVKGGRCE CQG G++KIEMNFLPDV+VEC
Sbjct: 704 YTKLFDDIRDIFAETQDAKLHGFKKGRFSFNVKGGRCEACQGAGILKIEMNFLPDVYVEC 763

Query: 772 EECKGARYNHETLEVKYKGKSISDVLNMSVEEAREHFKNIPQISNKLKTLCDVGLGYIKL 831
           E CKG RYN ETL+V YKGK+I DVL MSV EA E FKNIP +  +LK L DVGL YIKL
Sbjct: 764 EVCKGKRYNKETLDVYYKGKNIYDVLEMSVIEAYEFFKNIPALERRLKVLIDVGLDYIKL 823

Query: 832 GQSSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLIDVLNSLVEKGN 891
           GQ +TTLSGGEAQRIKL  ELSK + GNT+Y+LDEPTTGLHF D+KKL++VLN L+EKGN
Sbjct: 824 GQPATTLSGGEAQRIKLATELSKMSKGNTVYILDEPTTGLHFQDIKKLLEVLNRLLEKGN 883

Query: 892 TVVVIEHNLDVIKCADHIIDLGPEGGEFGGKIIATGTPEEIAKCKLSHTGKFLKNILSKN 951
           TV++IEHNLDVIK AD+IID+G +GGE GG I+ATGTPEEIAK K S+TGK++  IL K+
Sbjct: 884 TVIIIEHNLDVIKTADYIIDIGVDGGENGGTIVATGTPEEIAKSKKSYTGKYIAKILKKS 943



 Score = 63.5 bits (153), Expect = 6e-14
 Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 7/112 (6%)

Query: 2   KDIIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAYA 61
           K I + GA+ +NLKNI +  P   + VVTGVSGSGKST+   T+Y           +   
Sbjct: 612 KSIKLYGAKGNNLKNIDVEFPLGIMTVVTGVSGSGKSTLVNSTLYP-------VLFNKLN 664

Query: 62  RQFLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYA 113
           +  L  +    ++ ++GL   I I Q    + PRS   T T+++D +R ++A
Sbjct: 665 KGKLYPLEYGKIEGLDGLEKVINIDQTPIGRTPRSNPATYTKLFDDIRDIFA 716