Pairwise Alignments

Query, 951 a.a., excinuclease ABC subunit UvrA from Methanococcus maripaludis JJ

Subject, 940 a.a., excinuclease ABC subunit UvrA from Escherichia coli ECRC98

 Score = 1037 bits (2681), Expect = 0.0
 Identities = 529/955 (55%), Positives = 702/955 (73%), Gaps = 22/955 (2%)

Query: 1   MKDIIIKGAREHNLKNISLTLPRNNLIVVTGVSGSGKSTIAFDTIYAEGQRRYVESLSAY 60
           M  I ++GAR HNLKNI+L +PR+ LIVVTG+SGSGKS++AFDT+YAEGQRRYVESLSAY
Sbjct: 1   MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60

Query: 61  ARQFLGLMNKPDVDSIEGLSPAIAIQQKTTSKNPRSTVGTVTEIYDYLRLLYARIGIPYC 120
           ARQFL LM KPDVD IEGLSPAI+I+QK+TS NPRSTVGT+TEI+DYLRLLYAR+G P C
Sbjct: 61  ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYARVGEPRC 120

Query: 121 PEHNIRIESQSPEKIAEKI-EEEFSETVTILSPIVRQKKGTYQKLFKDLNSEGFARIRVN 179
           P+H++ + +Q+  ++ + +  +   + + +L+PI++++KG + K  ++L S+G+ R R++
Sbjct: 121 PDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARID 180

Query: 180 GEIYRTDDEITLERYKKHDIEIVIDRLTPKDDHS-RLVEACERALERSGGLLIVTGTKNN 238
           GE+    D   LE  KKH IE+V+DR   +DD + RL E+ E ALE SGG  +V    + 
Sbjct: 181 GEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDP 240

Query: 239 EEFEKIYSSNLACPICGISFEELQPRMFSFNSPFGACEYCSGLGIKMEFDADLIIPDKNK 298
           +  E ++S+N ACPICG S  EL+PR+FSFN+P GAC  C GLG++  FD D +I +   
Sbjct: 241 KAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPEL 300

Query: 299 CIADGAVALY--RNFLDGYRSQHLAAVANHFGFTVLTPIKDLSKEQLDILMYGS-PEKIH 355
            +A GA+  +  RNF   Y  Q L ++A+H+ F V  P   LS     +++YGS  E I 
Sbjct: 301 SLAGGAIRGWDRRNF---YYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIE 357

Query: 356 FKVSNGSGDTEWSQNKPWEGLIPQSIRLYNETKSEYRRKELEKFMKVSLCPKCGGKRLKD 415
           FK  N  GDT   ++ P+EG++    R Y ET+S   R+EL KF+    C  C G RL+ 
Sbjct: 358 FKYMNDRGDTSIRRH-PFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRR 416

Query: 416 KALAVKIEDKSIIDLTDLSISKAEEFFNNLKLTDKEYEIAKQVIKEIKSRLKFLNDVGLG 475
           +A  V +E+  +  ++D+SI  A EFFNNLKL  +  +IA++++KEI  RLKFL +VGL 
Sbjct: 417 EARHVYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLN 476

Query: 476 YLTLSRRSGTLSGGEAQRIRLATQIGSNLTGVLYVLDEPSIGLHQRDNQKLIETLHKLRN 535
           YLTLSR + TLSGGEAQRIRLA+QIG+ L GV+YVLDEPSIGLHQRDN++L+ TL  LR+
Sbjct: 477 YLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRD 536

Query: 536 LDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVVAVGTPTEISKNKDSLTGKYLSGEL 595
           L NT++VVEHDED I  AD+V+D+GPGAGVHGG+VVA G    I    +SLTG+Y+SG+ 
Sbjct: 537 LGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKR 596

Query: 596 KIEIPKNR--RKSDKFLKLSNCRQNNLKNVSVEIPTGVFNVITGVSGSGKSTLIYENLYP 653
           KIE+PK R     +K LKL+  R NNLK+V++ +P G+F  ITGVSGSGKSTLI + L+P
Sbjct: 597 KIEVPKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFP 656

Query: 654 ALKEKIKSEESVEELDFEDQLYENTKEKCNLEINSEIDKVVVIDQSPIGRTPRSNPATYT 713
             + ++      E   + D           ++     DKV+ IDQSPIGRTPRSNPATYT
Sbjct: 657 IAQRQLNGATIAEPAPYRD-----------IQGLEHFDKVIDIDQSPIGRTPRSNPATYT 705

Query: 714 KVFDKIRQVFAETKEAKIKGYGPGRFSFNVKGGRCENCQGDGVIKIEMNFLPDVFVECEE 773
            VF  +R++FA   E++ +GY PGRFSFNV+GGRCE CQGDGVIK+EM+FLPD++V C++
Sbjct: 706 GVFTPVRELFAGVPESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQ 765

Query: 774 CKGARYNHETLEVKYKGKSISDVLNMSVEEAREHFKNIPQISNKLKTLCDVGLGYIKLGQ 833
           CKG RYN ETLE+KYKGK+I +VL+M++EEARE F  +P ++ KL+TL DVGL YI+LGQ
Sbjct: 766 CKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQ 825

Query: 834 SSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTTGLHFHDVKKLIDVLNSLVEKGNTV 893
           S+TTLSGGEAQR+KL RELSKR TG T+Y+LDEPTTGLHF D+++L+DVL+ L ++GNT+
Sbjct: 826 SATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTI 885

Query: 894 VVIEHNLDVIKCADHIIDLGPEGGEFGGKIIATGTPEEIAKCKLSHTGKFLKNIL 948
           VVIEHNLDVIK AD I+DLGPEGG  GG+I+ +GTPE +A+C+ SHT +FLK +L
Sbjct: 886 VVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML 940