Pairwise Alignments

Query, 295 a.a., glycine betaine ABC transporter substrate-binding protein from Methanococcus maripaludis JJ

Subject, 315 a.a., Substrate-binding region of ABC-type glycine betaine transport system from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  125 bits (314), Expect = 1e-33
 Identities = 73/270 (27%), Positives = 127/270 (47%), Gaps = 9/270 (3%)

Query: 35  TIKFGLPPWPGVTVKSNVVKVILEEQGYNVELNQLDAGITYAKLADG-DLDVSLAGWLPT 93
           T+ F    W  +TV + V   +LE  GY  +   +   +TY  LADG ++DV L  W+PT
Sbjct: 29  TVNFSDVGWTDITVTTAVTSAVLESLGYKTKTTMISVPVTYKSLADGKNMDVFLGNWMPT 88

Query: 94  THEEYWT-QYGNQLEMVHVNVGKTALGLAVPTYTYEAGIQSITDLNGNEELFDGKIIGIE 152
              +    +    +E V  N+      LAVP   Y+ G+    D+   ++   GKI GIE
Sbjct: 89  MENDIKPYREAGTVETVRANLENAKYTLAVPEALYDKGLHDFADIAKFKKELGGKIYGIE 148

Query: 153 PGAG----IMSNTEKAIDSYSLSGYELQSSSTPAMMAELARAINEDENIVVTVWEPHSVF 208
           PG      I S  +K       +G+++  SS  AM++++ RA+    ++V   WEPH + 
Sbjct: 149 PGNDGNRLIQSMIDKNAFGLKDAGFKVVESSEAAMLSQVDRAVKRKNDVVFLGWEPHPMN 208

Query: 209 FKFDIKMLDDPEKVYG---NGDKVYTIARTDFKDDYPEVYEFFQKFEVDPSVQSEWIYKY 265
            +F +K L   +  +G       +YT  R  +  +   V +  +      +++S  +   
Sbjct: 209 TRFKMKYLTGGDDFFGPNYGQATIYTNTRKGYSQECSNVGQLLKNLSFTLNMESTLMGNV 268

Query: 266 SDEGMDPEEVAEEWVANNPELVANWTSHMN 295
            D+ M P+  A+ W+  NP+++  W + +N
Sbjct: 269 LDDKMKPDAAAKAWIKKNPQVLDTWLAGVN 298