Pairwise Alignments

Query, 920 a.a., chemotaxis protein CheA from Methanococcus maripaludis JJ

Subject, 654 a.a., fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein (NCBI) from Escherichia coli BW25113

 Score =  291 bits (745), Expect = 9e-83
 Identities = 162/451 (35%), Positives = 275/451 (60%), Gaps = 11/451 (2%)

Query: 476 GGNTVTIYYDSDESEDDIKEIIS---KTPEITEFLVNVQKNTNNSKDNTKIKNTVDATSK 532
           G ++++     D +EDDI  ++    +  +IT   V V    +                 
Sbjct: 191 GADSLSAILPGDIAEDDITAVLCFVIEADQITFETVEVSPKISTPPVLKLAAEQAPTGRV 250

Query: 533 KQAENSSSKKSQTVRVNIEKLDKLMNLVGEVVINRANFTQIATKYDLK---ELHNAVGRL 589
           ++ + + S +S ++RV +EK+D+L+NLVGE+VI ++   Q +++ D     +L  ++G+L
Sbjct: 251 EREKTTRSNESTSIRVAVEKVDQLINLVGELVITQSMLAQRSSELDPVNHGDLITSMGQL 310

Query: 590 NMLATELQEEVMGMRMIPVAFVFNRFPRTVRDTAKALDKEIDFEIEGSDIELDRTVLDEL 649
              A +LQE VM +RM+P+ +VF+R+PR VRD A  L K+++  + GS  ELD+++++ +
Sbjct: 311 QRNARDLQESVMSIRMMPMEYVFSRYPRLVRDLAGKLGKQVELTLVGSSTELDKSLIERI 370

Query: 650 AEPLTHLIRNSLDHGIEHADERIKLGKPEKGILKLIATRQRDRVNIIIRDDGKGIDPDAM 709
            +PLTHL+RNSLDHGIE  ++R+  GK   G L L A  Q   + I + DDG G++ + +
Sbjct: 371 IDPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERI 430

Query: 710 RKKAFEKGLYSKEEAEKLTDNEAVNVIFLPGFSTAEVVSDVSGRGVGMDVVRSKIESLGG 769
             KA  +GL     +E ++D+E   +IF PGFSTAE V+DVSGRGVGMDVV+  I+ +GG
Sbjct: 431 LAKAASQGL---TVSENMSDDEVAMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQKMGG 487

Query: 770 SVTVNSEVGKGTEITLHLPLTMAIIQTLLIRLNEHIYALPLTSVLDVISVEKEQIKNLEG 829
            V + S+ G GT I + LPLT+AI+  + +R+ + ++ LPL +V++ +   +  +  L G
Sbjct: 488 HVEIQSKQGTGTTIRILLPLTLAILDGMSVRVADEVFILPLNAVMESLQPREADLHPLAG 547

Query: 830 QEAII-YRNHILPVIWLKDALNTSGF-SDSDDLYVVVVEKNKGKVGMILDEVIGRDEIVV 887
            E ++  R   LP++ L    N +G  +++    VV+++    +  +++D++IG+ ++VV
Sbjct: 548 GERVLEVRGEYLPIVELWKVFNVAGAKTEATQGIVVILQSGGRRYALLVDQLIGQHQVVV 607

Query: 888 KPLTGILKNINGLAGATILGDGRVALILDLN 918
           K L    + + G++ ATILGDG VALI+D++
Sbjct: 608 KNLESNYRKVPGISAATILGDGSVALIVDVS 638



 Score = 78.6 bits (192), Expect = 1e-18
 Identities = 49/202 (24%), Positives = 104/202 (51%), Gaps = 11/202 (5%)

Query: 3   DMEQYKELFMTEAEEHLQSLNQNMVELENCPEDSERIINMIFRSAHTLKGSARTLGFEHI 62
           D+  + + F  EA+E L  + Q+++ L+    D+E++ N IFR+AH++KG A T GF  +
Sbjct: 4   DISDFYQTFFDEADELLADMEQHLLVLQPEAPDAEQL-NAIFRAAHSIKGGAGTFGFSVL 62

Query: 63  SSLTHHMEDILDYIRDGKIKVNPEIVDLLFKCLDALETMVSEVSDGEDTTSVDVDSLVEV 122
              TH ME++LD  R G++++N +I++L  +  D ++  +      ++  +   D + + 
Sbjct: 63  QETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQLDAYKQSQEPDAASFDYICQA 122

Query: 123 IKSVKEKYLSGENPKEDPLDCSDPNEVAKKQVEEKTVNNISSNSGSIHLVDESSIILIEG 182
           ++      L+ E   E P   +  + VAK + +++   + S     +  +    + L+E 
Sbjct: 123 LRQ-----LALEAKGETPSAVTRLSVVAKSEPQDEQSRSQSPRRIILSRLKAGEVDLLEE 177

Query: 183 QSNNF-----VVEKPENLDSVL 199
           +  +      VV+  ++L ++L
Sbjct: 178 ELGHLTTLTDVVKGADSLSAIL 199