Pairwise Alignments

Query, 247 a.a., RNA polymerase sigma-70 RpoE type from Marinobacter adhaerens HP15

Subject, 191 a.a., RNA polymerase sigma factor RpoE from Escherichia coli ECOR27

 Score =  220 bits (561), Expect = 1e-62
 Identities = 109/185 (58%), Positives = 146/185 (78%), Gaps = 2/185 (1%)

Query: 59  TDLQLVRKVRNGDRAAFDLLVVKYQSRVASIISRYVYDSQEVMDLTQETFVKAFRAIERF 118
           TD  LV +V+ GD+ AF+LLVV+YQ +VAS++SRYV  S +V D+ QE F+KA+RA++ F
Sbjct: 6   TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYV-PSGDVPDVVQEAFIKAYRALDSF 64

Query: 119 RGDSAFYTWLYRIAVNTAKNYLESRGRRPQGS-ADSAEAENFDDGSRLRDTASPERLLQR 177
           RGDSAFYTWLYRIAVNTAKNYL ++GRRP  S  D+ EAENF+ G  L++ ++PE L+  
Sbjct: 65  RGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLS 124

Query: 178 EQLQKELNKAIAQLPEELRSAFLLREYDGLSYEDIAGILECPIGTVRSRIFRARDAVDRH 237
           E+L++ + + I  LPE+LR A  LRE DGLSYE+IA I++CP+GTVRSRIFRAR+A+D  
Sbjct: 125 EELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 184

Query: 238 LGPLL 242
           + PL+
Sbjct: 185 VQPLI 189