Pairwise Alignments

Query, 187 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Marinobacter adhaerens HP15

Subject, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  122 bits (307), Expect = 3e-33
 Identities = 61/169 (36%), Positives = 104/169 (61%), Gaps = 6/169 (3%)

Query: 17  LRSVARKDRQAFQQLYSQVAARMFGLCVKLANHRELAEEAMQESFIQIWHHAGEYHRDRG 76
           L++ AR D++A +QLY Q ++ + G+ +++A +R LAE+ + ++FI+IW  AG +   RG
Sbjct: 8   LQACARGDQRALRQLYEQESSHLLGVAMRIARNRSLAEDIVHDAFIKIWRGAGSFDPSRG 67

Query: 77  APLAWMMTIARYRTLDLMRARKVRQTAGDEHLEQVEDKRGGPMDDSLRTSGEAQLTGCLE 136
           +   W+ ++ R+  L+ +R +       DEH EQV        D    T+   Q+  CLE
Sbjct: 68  SARGWVFSVTRHLALNFVRNQYREVPLSDEH-EQV-----AATDTFEFTARSGQVHTCLE 121

Query: 137 ELSDVQRDSILLAYYRGFTHDELSETFNSPVGTVKSWIRRGLMALKRCL 185
           +L  V+R  IL AY  G++H E+++  ++P+GTVK+WI+R L AL+ C+
Sbjct: 122 QLDPVRRTCILHAYVDGYSHSEIAQKLDTPLGTVKAWIKRSLAALRECM 170