Pairwise Alignments

Query, 187 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Marinobacter adhaerens HP15

Subject, 193 a.a., RNA polymerase sigma-H factor from Pseudomonas simiae WCS417

 Score = 64.3 bits (155), Expect = 1e-15
 Identities = 47/187 (25%), Positives = 86/187 (45%), Gaps = 9/187 (4%)

Query: 8   VNQDELMRLLRSVARKDRQAFQQLYSQVAARMFGLCVKLANHRELAEEAMQESFIQIWHH 67
           + Q+E  +L+  V R D++AF  L  +   ++ GL V+  +    A++  QE+FI+ +  
Sbjct: 2   LTQEEDQQLVERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDTHEAQDVAQEAFIKAYRA 61

Query: 68  AGEYHRDRGAPLAWMMTIARYRTLDLMRARKVRQTAGDEHLEQVEDKRG--------GPM 119
            G +  D  A   W+  IA     + + +R  R    D   E  E   G         P 
Sbjct: 62  LGNFRGD-SAFYTWLYRIAINTAKNYLVSRGRRPPDSDVSSEDAEFYDGDHGLKDLESPE 120

Query: 120 DDSLRTSGEAQLTGCLEELSDVQRDSILLAYYRGFTHDELSETFNSPVGTVKSWIRRGLM 179
              LR   E  +   +++L +  R ++ L  + G ++++++     PVGTV+S I R   
Sbjct: 121 RALLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRARE 180

Query: 180 ALKRCLE 186
           A+ + L+
Sbjct: 181 AIDKALQ 187