Pairwise Alignments

Query, 187 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Marinobacter adhaerens HP15

Subject, 182 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score =  108 bits (270), Expect = 6e-29
 Identities = 60/172 (34%), Positives = 95/172 (55%), Gaps = 1/172 (0%)

Query: 15  RLLRSVARKDRQAFQQLYSQVAARMFGLCVKLANHRELAEEAMQESFIQIWHHAGEYHRD 74
           R L + A+ DR+A Q LY    AR+ G+  ++A     AE+ + ++ I+IW  A  Y   
Sbjct: 12  RCLLACAQGDRRALQALYDHEGARLLGVARRIARDDATAEDIVHDAIIRIWTRAASYDPA 71

Query: 75  RGAPLAWMMTIARYRTLDLMRARKVRQTAGDEHLEQVEDKRGGPMDDSLRTSGEAQLTGC 134
           RG+   W+ +I R+  L+ +R  + R+T   +   +      G +DD    SG A++  C
Sbjct: 72  RGSARGWIYSITRHLALNSIRDTR-RETVLTDADTETASTLHGRVDDLDLWSGSAKIYRC 130

Query: 135 LEELSDVQRDSILLAYYRGFTHDELSETFNSPVGTVKSWIRRGLMALKRCLE 186
           LE+L    +  IL AY  G +H E++    +P+GTVK+WI+R L AL+ CLE
Sbjct: 131 LEQLQPAPQRCILHAYVDGCSHAEIAGLLGAPLGTVKAWIKRSLKALRECLE 182