Pairwise Alignments

Query, 187 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Marinobacter adhaerens HP15

Subject, 221 a.a., RNA polymerase sigma factor from Magnetospirillum magneticum AMB-1

 Score = 73.9 bits (180), Expect = 2e-18
 Identities = 47/173 (27%), Positives = 91/173 (52%), Gaps = 4/173 (2%)

Query: 16  LLRSVARKDRQAFQQLYSQVAARMFGLCVKLANHRELAEEAMQESFIQIWHHAGEYHRDR 75
           LLR++A+ DR++FQ+L  +    M  L  ++  + + A+E +QE+F+++W  A  +  DR
Sbjct: 42  LLRAIAQGDRRSFQRLMERHVRAMLALSTRVLRNPDDADEIVQEAFLKVWTLASGWQSDR 101

Query: 76  GAPLA-WMMTIARYRTLDLMRARKVRQTAGDEHLEQVEDKRGGPMDDSLRTSGEAQLTGC 134
            A  + W+  +    +LD  R R+ R  A +E  E V+   GG +D  +    E  ++  
Sbjct: 102 EAKFSTWLYRVVLNASLD--RLRRARFVAEEEADEPVDPAPGG-LDRVVARQRERLVSTA 158

Query: 135 LEELSDVQRDSILLAYYRGFTHDELSETFNSPVGTVKSWIRRGLMALKRCLER 187
           + E+   QR+++ L Y+   T  E +   +  +  +++ + RG  +L+  L R
Sbjct: 159 MAEMPARQREALSLYYFSDLTAPEAARVLDLSLSAMEALLVRGKRSLRTALAR 211