Pairwise Alignments

Query, 187 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Marinobacter adhaerens HP15

Subject, 174 a.a., RNA polymerase sigma factor, sigma-70 family from Kangiella aquimarina DSM 16071

 Score = 73.2 bits (178), Expect = 2e-18
 Identities = 49/177 (27%), Positives = 85/177 (48%), Gaps = 6/177 (3%)

Query: 11  DELMRLLRSVARKDRQAFQQLYSQVAARMFGLCVKLANHRELAEEAMQESFIQIWHHAGE 70
           D+  +L+    + D QAF+QLY Q + +++ LC+++     LAEE MQ++FI+ W   G+
Sbjct: 4   DDENQLVALAKQGDMQAFEQLYRQFSNKIYLLCLRMTGRPALAEEHMQDAFIKAWQALGK 63

Query: 71  YHRDRGAPLAWMMTIARYRTLDLMRARKVRQTAGDEHLEQVEDKRGGPMDDSLRTSGEAQ 130
           +  +      W+  IA    L+  R   +   A  +  +  ED+       +     +  
Sbjct: 64  FEGNSKFS-TWVYRIAVNVVLNEQRKNHIEIHADQDWQQAFEDEL-----SATHHPQQID 117

Query: 131 LTGCLEELSDVQRDSILLAYYRGFTHDELSETFNSPVGTVKSWIRRGLMALKRCLER 187
           L   + +L    R+ +LL    G TH+E+ +T     GT K+ + R  + LK  LER
Sbjct: 118 LEKAIVKLPAQARNVLLLHDIMGMTHEEIGDTLGIASGTCKAHLSRARVLLKEQLER 174