Pairwise Alignments

Query, 187 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Marinobacter adhaerens HP15

Subject, 177 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 79.7 bits (195), Expect = 3e-20
 Identities = 49/184 (26%), Positives = 94/184 (51%), Gaps = 12/184 (6%)

Query: 8   VNQDELMRLLRSVARKDRQAFQQLYSQVAARMFGLCVKLANHRELAEEAMQESFIQIWHH 67
           + +D+L+  LR+   KD++    LY + +  +F +  ++    ++AEE   ++F++I   
Sbjct: 1   MQEDQLITGLRA---KDKRTVDYLYEKYSRALFVVISRVIKDHDIAEEVFHDAFVKIIRR 57

Query: 68  AGEYHRDRGAPLAWMMTIARYRTLDLMRARKVRQTAG----DEHLEQVEDKRGGPMDDSL 123
              Y   +G    WM  + R   +D  R+++  + +     D ++  +E   G    +++
Sbjct: 58  IDSYDESKGRLYTWMANVCRNAAIDKTRSKEFSKDSKTNTIDNYVYGLEGTSG--TTEAV 115

Query: 124 RTSGEAQLTGCLEELSDVQRDSILLAYYRGFTHDELSETFNSPVGTVKSWIRRGLMALKR 183
              G  +L   +  L++ QR  +   Y++G+TH E+SE F  P+GTVKS IR  L  LK+
Sbjct: 116 DGIGVKEL---ITNLNEEQRFVVECIYFKGYTHSEISEEFEIPLGTVKSRIRAALGVLKK 172

Query: 184 CLER 187
            + R
Sbjct: 173 NINR 176