Pairwise Alignments

Query, 187 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Marinobacter adhaerens HP15

Subject, 203 a.a., RNA polymerase sigma factor, sigma-70 family from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 62.4 bits (150), Expect = 5e-15
 Identities = 37/168 (22%), Positives = 84/168 (50%), Gaps = 10/168 (5%)

Query: 18  RSVARKDRQAFQQLYSQVAARMFGLCVKLANHRELAEEAMQESFIQIWHHAGEYHRDRGA 77
           ++V +KD+QA+  L  +    ++ + +K+    + AE+   E+F + + +  ++ +D   
Sbjct: 21  QAVDQKDQQAYATLMKRYKKAVYFMILKMIRDADDAEDLTMEAFAKAFRNLHKFKKDYTF 80

Query: 78  PLAWMMTIARYRTLDLMRARKVRQTAGDEHLEQ---------VEDKRGGPMDDSLRTSGE 128
              W+  IA   T+D +R +K++  + +  L           VED    P D+ +++   
Sbjct: 81  S-TWLFRIATNNTIDFIRKKKLKTMSLNNTLTDDGGNSVNIDVEDDDNNPQDEFIKSQRI 139

Query: 129 AQLTGCLEELSDVQRDSILLAYYRGFTHDELSETFNSPVGTVKSWIRR 176
             +   +++L    R  + L Y+   ++DE+++  + P+GTVK+ + R
Sbjct: 140 EMVRIFVDKLPAKYRKLVKLRYFDELSYDEIAQELDKPLGTVKAQLHR 187