Pairwise Alignments

Query, 187 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Marinobacter adhaerens HP15

Subject, 180 a.a., sigma factor from Agrobacterium fabrum C58

 Score =  120 bits (301), Expect = 1e-32
 Identities = 58/176 (32%), Positives = 94/176 (53%)

Query: 12  ELMRLLRSVARKDRQAFQQLYSQVAARMFGLCVKLANHRELAEEAMQESFIQIWHHAGEY 71
           E+  L+  V   DR AF  LY   + ++F +C+K+   R  AEEA+QE +I++W  A  +
Sbjct: 5   EIATLINRVGMGDRSAFVSLYQATSPKLFAICLKILRDRTEAEEALQEIYIKVWQRARTF 64

Query: 72  HRDRGAPLAWMMTIARYRTLDLMRARKVRQTAGDEHLEQVEDKRGGPMDDSLRTSGEAQL 131
               G P  W+ TIAR   +D +RARK      DE  + V++    P    +      ++
Sbjct: 65  AVSAGKPATWLATIARNHAIDTIRARKPASDDIDEAYDLVDESIRDPEQQVVLVDEGRRI 124

Query: 132 TGCLEELSDVQRDSILLAYYRGFTHDELSETFNSPVGTVKSWIRRGLMALKRCLER 187
             C+ EL  V   ++  AY  G ++ ELS+    P+ TV++W+RR L+ L+ C++R
Sbjct: 125 DDCMRELETVHAQAVRRAYVEGLSYLELSDELRVPLNTVRTWLRRSLLKLRECMQR 180