Pairwise Alignments

Query, 187 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily from Marinobacter adhaerens HP15

Subject, 181 a.a., putative RNA polymerase sigma-70 factor from Agrobacterium fabrum C58

 Score =  125 bits (315), Expect = 3e-34
 Identities = 67/180 (37%), Positives = 99/180 (55%), Gaps = 10/180 (5%)

Query: 11  DELMRLLRSVARKDRQAFQQLYSQVAARMFGLCVKLANHRELAEEAMQESFIQIWHHAGE 70
           D+L R L + AR DR A + ++ + A R+  +  ++   RELAEE +QESF++IW HA +
Sbjct: 6   DDLDRALAACARGDRNALRVIFEREAGRLIAVAERIVKRRELAEEVVQESFVRIWTHAPQ 65

Query: 71  YHRDRGAPLAWMMTIARYRTLDLMRARKVRQTAGDEHLEQVEDKRGGPMDDSL-----RT 125
           Y  D G+   W+  I R R L+L+R      T  D     VE  R     D +     + 
Sbjct: 66  YRADHGSARGWIYAIVRNRALNLLRDGSRELTVQD-----VETLRDSEQADEVVAAWQKL 120

Query: 126 SGEAQLTGCLEELSDVQRDSILLAYYRGFTHDELSETFNSPVGTVKSWIRRGLMALKRCL 185
              ++L  CL  L + +R  IL+AY  G++H E++     P+GT KSWIRRGL AL+ C+
Sbjct: 121 DRNSRLYECLGALDETKRQGILMAYVAGYSHGEIAGRLRVPLGTTKSWIRRGLSALRECM 180