Pairwise Alignments

Query, 310 a.a., site-specific tyrosine recombinase XerC from Marinobacter adhaerens HP15

Subject, 298 a.a., site-specific tyrosine recombinase XerD (NCBI) from Escherichia coli BW25113

 Score =  208 bits (529), Expect = 1e-58
 Identities = 111/292 (38%), Positives = 176/292 (60%), Gaps = 5/292 (1%)

Query: 9   LAEFIRHLASEKRHSPRTCDSYHRDLLRLADWLGRSGFVAWQRVTNHDLRRYVATLSREG 68
           + +F+  L  EK  +  T ++Y RDL  + +WL   G        + DL+  +A     G
Sbjct: 8   IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTL-ATAQSDDLQALLAERLEGG 66

Query: 69  LSGRSIARHLSATRRFYQFLLREKLASDNPALDIRAPKSGRRLPRVADVDQLNHLLDGQP 128
               S AR LSA RR +Q+L REK   D+P+  + +PK  +RLP+     Q+  LL    
Sbjct: 67  YKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPL 126

Query: 129 -DDPLEVRDLCMFELMYSSGLRLAELASLDLDTVDVRSGEVRVMGKGGKERLLPVGRKAI 187
            D PLE+RD  M E++Y++GLR++EL  L +  + +R G VRV+GKG KERL+P+G +A+
Sbjct: 127 IDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAV 186

Query: 188 AAIQAWVPYRAALANDGEA--ALFVSQRGERLSHRSIQARLSRWGISRGAD-QKLHPHLL 244
             ++ ++ +      +G +   LF SQR ++++ ++   R+  + +  G D +KL PH+L
Sbjct: 187 YWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVL 246

Query: 245 RHSFASHMLESSGDLRAVQELLGHADIATTQVYTHLDFQHLARVYDQSHPRA 296
           RH+FA+H+L    DLR VQ LLGH+D++TTQ+YTH+  + L +++ Q HPRA
Sbjct: 247 RHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA 298