Pairwise Alignments

Query, 662 a.a., flagellar hook-associated 2 domain protein from Marinobacter adhaerens HP15

Subject, 452 a.a., flagellar filament capping protein from Pseudomonas putida KT2440

 Score =  142 bits (358), Expect = 3e-38
 Identities = 107/392 (27%), Positives = 189/392 (48%), Gaps = 46/392 (11%)

Query: 1   MASISSLGIGSGVLTSDLVDQLVAAERAPTEERLTQKTEQTQSLISAYGKLRSAITELRL 60
           MAS +  GIGSGV T  +V  L  AE+AP ++++T + + T + +SA G +++A+   R 
Sbjct: 1   MASTTVSGIGSGVDTQSIVKALADAEKAPKQQQITTQQKTTTTQVSAVGMIKNALDTFRS 60

Query: 61  PMRQLSAPDNLKAFSASSSNEEISVSVDSTKASRGTYSVEVTSLAGAQALASRDVFADRD 120
            + +L+   +    + +SS+E+++ +  +  AS G Y++EVT LA +  + + DVFA   
Sbjct: 61  AIAKLNTSTSFTGLAGTSSDEKVAKATVTASASAGNYALEVTQLATSSKITT-DVFAG-- 117

Query: 121 ATSVGQGRLTLNVGDKTTSITIDSSND---------TLQGLANAIND--SDAGVSAGVID 169
               G   +  N GD  T     SS D         TLQ + + IN      G++A ++ 
Sbjct: 118 ----GVSSVVNNSGDPQTLTISQSSADYNVTIPDGATLQQVRDLINKQLGSQGINANILT 173

Query: 170 TGDGFQLVLSADETGTANAVSIAVADDSVGTGTDNQGLSRFAFNSGMDADSGLRETIAAT 229
              G +LV+S+  TG  + ++++     V   T                         A 
Sbjct: 174 DAKGSRLVMSSSTTGEGSDITLSGDSSLVQNATPG---------------------APAQ 212

Query: 230 DAVMEINGVEITRATNSFENVIDGLTFDLTATGSSVIKVQQDLGAVTDRVQGFVDKFNAL 289
           +A   I+G+E+   +N+    I G+ F+L A G S + V  +   +   VQ FV  +NAL
Sbjct: 213 NAKYTIDGLELESKSNTVTGAISGVNFELLAEGKSRLSVATNTTTLKTSVQSFVSAYNAL 272

Query: 290 QSTIDS----LAGFNAEAGVGSLLTGDSTVRSIQNQLRQVLTRVVPGLENSAVRSLADVG 345
            + I++     A  +A       LTGD+T+R++ + +R  L   V      ++  L+ +G
Sbjct: 273 ITAINTQTKVTATGDASTTTAGALTGDATMRALVSTVRNEL---VKSTGAGSISMLSQMG 329

Query: 346 ITTNFETGGLEFDRARFEEQLKANPDDVTALF 377
           I T+ +TG L  D  ++++ +     D+ A+F
Sbjct: 330 INTDQQTGLLVLDDTKWDKAVAKGAADIAAVF 361



 Score = 62.4 bits (150), Expect = 4e-14
 Identities = 72/307 (23%), Positives = 125/307 (40%), Gaps = 44/307 (14%)

Query: 391 VRSGLNTEPGKYDIN---ITRAATQGTLVAGSALADGIVIDDSNDELTFKVNGETSVSVQ 447
           VR  +N + G   IN   +T A     +++ S   +G  I  S D    + N       Q
Sbjct: 154 VRDLINKQLGSQGINANILTDAKGSRLVMSSSTTGEGSDITLSGDSSLVQ-NATPGAPAQ 212

Query: 448 LTQQTYGSAQELVDEIQSQLNSNNALNA-AGTSVQVELDGSGNLRF-TSADYGDESAVSL 505
                  +A+  +D ++ +  SN    A +G + ++  +G   L   T+      S  S 
Sbjct: 213 -------NAKYTIDGLELESKSNTVTGAISGVNFELLAEGKSRLSVATNTTTLKTSVQSF 265

Query: 506 ESAENSAVFGLDSATETAGLDVAGTIGGRAAEGDGQV----------LFLGNGNGGASGL 555
            SA N+ +  +++ T+      A T    A  GD  +          L    G G  S L
Sbjct: 266 VSAYNALITAINTQTKVTATGDASTTTAGALTGDATMRALVSTVRNELVKSTGAGSISML 325

Query: 556 ---------QVRIL------GDETGARGS------ITFVEGVAERTVDLVSSFVGADGAI 594
                    Q  +L       D+  A+G+       T  +G+ +R      ++ G  G +
Sbjct: 326 SQMGINTDQQTGLLVLDDTKWDKAVAKGAADIAAVFTGDKGLIKRMTAATDAYTGTTGIL 385

Query: 595 ESRTESLNRDLEQIQASQARLEERIAAYRERLVSQFTAADSLISQLNSTQDYVSQQLAAL 654
            +RT++LN +L ++   Q  L+ RI      L +++ A D+L+++LN+T   V   L A+
Sbjct: 386 ATRTKNLNDNLTELTKQQEALDRRIETLTATLTAKYNAMDTLVAKLNATSSSVMTTLNAM 445

Query: 655 APQNNRD 661
              NN D
Sbjct: 446 NKANNDD 452



 Score = 32.3 bits (72), Expect = 5e-05
 Identities = 48/221 (21%), Positives = 91/221 (41%), Gaps = 15/221 (6%)

Query: 70  NLKAFSASSSNEEISVSVDSTKASRGTYSVEVTSLAGAQALASRDVFADRDATSVGQGRL 129
           N +  +   S   ++ +  + K S  ++     +L  A    ++ V A  DA++   G L
Sbjct: 238 NFELLAEGKSRLSVATNTTTLKTSVQSFVSAYNALITAINTQTK-VTATGDASTTTAGAL 296

Query: 130 TLNVGDKTTSITIDSSNDTLQGLANAINDSDAGVSAGVIDTG---DGFQLVLSADETGTA 186
           T   GD T    + +  + L      +  + AG  + +   G   D    +L  D+T   
Sbjct: 297 T---GDATMRALVSTVRNEL------VKSTGAGSISMLSQMGINTDQQTGLLVLDDTKWD 347

Query: 187 NAVSIAVADDSVGTGTDNQGLSRFAFNSGMDADSGLRETIAATDAVMEINGVEITRATNS 246
            AV+   AD +    T ++GL +    +  DA +G    +A     +  N  E+T+   +
Sbjct: 348 KAVAKGAADIAA-VFTGDKGLIK-RMTAATDAYTGTTGILATRTKNLNDNLTELTKQQEA 405

Query: 247 FENVIDGLTFDLTATGSSVIKVQQDLGAVTDRVQGFVDKFN 287
            +  I+ LT  LTA  +++  +   L A +  V   ++  N
Sbjct: 406 LDRRIETLTATLTAKYNAMDTLVAKLNATSSSVMTTLNAMN 446