Pairwise Alignments

Query, 1177 a.a., transcription-repair-coupling factor from Marinobacter adhaerens HP15

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas sp. SVBP6

 Score = 1424 bits (3686), Expect = 0.0
 Identities = 714/1155 (61%), Positives = 902/1155 (78%), Gaps = 17/1155 (1%)

Query: 17   PEFPSRPADHRTWGQLHGSSEALAICESARAHKGLTLVITRSTADAIRLEQAMRFFLGLP 76
            P  P+  A  +TWG L G++ +LAI E+A A K  TL++T  +  A RLEQ +RFF    
Sbjct: 7    PHLPAT-AGKQTWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSADRLEQELRFFA--- 62

Query: 77   PEEDGPAVSDDGLELLSLPDWETLPYDLFSPHQDIISRRIRTLHRLPATSHGVLVVPART 136
            PE          L +L  PDWETLPYDLFSPHQDIIS+RI +L+RLP   HG+LVVP  T
Sbjct: 63   PE----------LPVLPFPDWETLPYDLFSPHQDIISQRISSLYRLPELDHGILVVPITT 112

Query: 137  LMHRLPPVNYLQGNTLLLEVGQSLDIESWRMQLEAAGYRHAENVYEHGEYAVRGAILDIF 196
             +HRL P  +L G++L+L++GQ LD+E  R +LEA+GYR  + VYEHGE+AVRGA++D+F
Sbjct: 113  ALHRLAPTRFLLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLF 172

Query: 197  PMGASQPFRIDLFDDEIETLRTFDPETQRSIDRIERIELLPAFEFPWHKEARSGFRSRWF 256
            PMG+  P+RIDLFDDEIETLRTFDPETQRSID+++ + LLPA EFP  KEA + F++R+ 
Sbjct: 173  PMGSKLPYRIDLFDDEIETLRTFDPETQRSIDKVDSVRLLPAREFPLQKEAVTRFKARFR 232

Query: 257  EQFPDADKDTPIYQDVTHGITPPGIEYYLPLFFDETATLFDYLPGATHVFTADGLNDAVS 316
            E+F    + +PI+QD++ GITP GIEYYLPLFF++T+TLFDYLP  T VF+  G+  A  
Sbjct: 233  ERFDVDFRRSPIFQDLSSGITPAGIEYYLPLFFEDTSTLFDYLPQDTQVFSLPGVEQAAE 292

Query: 317  HFDSETRNRYEDRRHDRLRPILPPKRLFLQQEELFGQLKAFPRVTVSAETKDAA-GSVNC 375
            HF S+ RNRYE+RR D  RP+LPP  LFL  E+ F +LK++PRV VS +  D+  G    
Sbjct: 293  HFWSDVRNRYEERRIDPARPLLPPAELFLPVEDCFARLKSWPRVVVSQDDVDSGVGRERF 352

Query: 376  PTTTLPDIAMDGRAADPAGRLKRFLGEFDGHVLICAESSGRREALMENLGEQGVELKTLS 435
            P   LP++A++ +A  P   L  FL +F G VL  AES+GRRE L+E L    +  +T+ 
Sbjct: 353  PAQVLPNLAIEAKANQPLAALSGFLEQFSGRVLFTAESAGRREVLLELLERLKLRPQTVD 412

Query: 436  GWQAFLDDKESSVAITIAPMEQGLVLPEHSVALITETALFGERVLQRRRREKPTETD-DA 494
             W AF+  KE  +AITIAP+++GL+L + ++AL+ E+ LFG+RV+QRRRR+K ++ + DA
Sbjct: 413  SWSAFVAGKER-LAITIAPLDEGLLLDDPAIALVAESPLFGQRVMQRRRRDKRSDANNDA 471

Query: 495  GFRDLSELRIGAPVVHIDHGVGRYLGLETITVEGEASEFLMLGYAGGSKLYVPVSSLHLI 554
              ++L+ELR GAPVVHIDHGVGRYLGL T+ ++ +A+EFL L YA G+KLYVPV++LHLI
Sbjct: 472  VIKNLTELREGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLI 531

Query: 555  SRYAGNDTEHAPLHKLGTDRWSTAKQKALEKIRDTAAELLDVYARREARKGFSFEDPKEA 614
            +RY G+D   APLH+LG++ W  AK+KA E++RD AAELLD+YARR ARKG++F DP   
Sbjct: 532  ARYTGSDDALAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSVD 591

Query: 615  YRAFAAGFPFEETPDQQVAIQSVFEDMTSEQPMDRLVCGDVGFGKTEVAMRAAFLATWSG 674
            Y  F+AGFPFEETPDQQ AI++V EDM + +PMDRLVCGDVGFGKTEVAMRAAF+A   G
Sbjct: 592  YATFSAGFPFEETPDQQSAIEAVREDMLAAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGG 651

Query: 675  KQVAVLVPTTLLAQQHYESFRDRFSDTPVQVELLSRFRTAGQTSKALEAVENGRADIVIG 734
            +QVA+LVPTTLLAQQHY SFRDRF+D PV VE++SRF++  + + A+  +  G+ DIVIG
Sbjct: 652  RQVAILVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSPKEVAAAVADLAEGKIDIVIG 711

Query: 735  THKLLQGDIKFKNLGLVIIDEEHRFGVQQKERLKALRAEVDMLNLTATPIPRTLNMAMGH 794
            THKLLQ D+K K+LGLVIIDEEHRFGV+QKE+LKALR+EVD+L LTATPIPRTLNMA+  
Sbjct: 712  THKLLQDDVKIKDLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAG 771

Query: 795  LRDLSIIATPPARRLSVKTFVRQKDNAMVKEAILREILRGGQVYFLHNDVATIEKTAEDL 854
            +RDLSIIATPPARRLSV+TFV +++ + VKEA+LRE+LRGGQVY+LHNDV +IEK A DL
Sbjct: 772  MRDLSIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKSIEKCAADL 831

Query: 855  RSLIPEARVGVAHGQMRERDLEKIMSDFYHKRFNVLVCTTIIETGIDVPSANTIIIERAD 914
              L+PEAR+G+ HGQMRER+LE++MSDFYHKRFNVL+ +TIIETGIDVPSANTIIIERAD
Sbjct: 832  AELVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERAD 891

Query: 915  KFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKSITADAKKRLDAISEAQDLGAGFMLATHD 974
            KFGLAQLHQLRGRVGRSHHQAYAYLLTPP + IT DA+KRL+AI+  QDLGAGF+LAT+D
Sbjct: 892  KFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATND 951

Query: 975  LEIRGAGELLGEEQSGQIESIGFTLYMQLLDEAVKAIREGRTPNADLPLSHGTEMNLRIP 1034
            LEIRGAGELLGE QSGQI+++GFTLYM++L+ AVKAIR+G  PN D PL  G E+NLR+P
Sbjct: 952  LEIRGAGELLGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLDQPLGGGPEINLRLP 1011

Query: 1035 ALIPEDYLPDVHNRLMLYKRIASVDSPEALKELQVEMIDRFGLLPDPAKNLIRQTELRLR 1094
            ALIPEDYLPDVH RL+LYKRIAS    + LK+LQVEMIDRFGLLP+P KNL+R T L+L+
Sbjct: 1012 ALIPEDYLPDVHARLILYKRIASAVDEDGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQ 1071

Query: 1095 AEALGIVKVDAGKEWARLEFGSSTPVDPLVLVKKVQSAPDQYRLEGANSFRFRLKDATTG 1154
            AE LGI KVDAG    ++EF + TPVDPLVL+K +Q  P +Y+ EGA  F+F +      
Sbjct: 1072 AEKLGIKKVDAGPNGGKIEFEAQTPVDPLVLIKLIQGQPKRYKFEGATQFKFLVPMERPE 1131

Query: 1155 GKLDGISRMLGELEP 1169
             + + +  +   L P
Sbjct: 1132 ERFNNLEALFERLTP 1146