Pairwise Alignments

Query, 1177 a.a., transcription-repair-coupling factor from Marinobacter adhaerens HP15

Subject, 1159 a.a., transcription-repair coupling factor from Magnetospirillum magneticum AMB-1

 Score =  728 bits (1880), Expect = 0.0
 Identities = 449/1169 (38%), Positives = 649/1169 (55%), Gaps = 77/1169 (6%)

Query: 37   EALAICESARAH--KGLTLVITRSTADAIRLEQAMRFFLGLPPEEDGPAVSDDGLELLSL 94
            +AL + E A     +G  L + R      R+ +A+ FF                L++L  
Sbjct: 24   DALLLAELAAGGCAQGGILHVARDEGRMARVAEALAFFA-------------PDLQVLEF 70

Query: 95   PDWETLPYDLFSPHQDIISRRIRTLHRLPATSHGVLVVPART--LMHRLPPVNYLQGNTL 152
            P W+ +PYD  SPH D+++RRI TL RL     G  VV      L  R+PP   L   TL
Sbjct: 71   PGWDCVPYDRVSPHVDMVARRIDTLARLADGVKGAFVVLTTVPGLAQRVPPREALASATL 130

Query: 153  LLEVGQSLDIESWRMQLEAAGYRHAENVYEHGEYAVRGAILDIFPMGASQPFRIDLFDDE 212
                G  L ++     L   GY  A+ V E GEYAVRG I+D++P G+++P R+D F DE
Sbjct: 131  DARKGSRLSMDKLIGFLSKNGYVRADTVMEPGEYAVRGGIVDLYPPGSAEPLRLDFFGDE 190

Query: 213  IETLRTFDPETQRSIDRIERIELLPAFEFPWHKEARSGFRSRWFEQFPDADKDTPIYQDV 272
            I+++R+FDP +QR+   +      P  E      + + FR+ + E F       P+Y+ +
Sbjct: 191  IDSVRSFDPMSQRTTGPMAGFVCRPVSEVGLDDASIARFRTNYREMFGVISGPDPLYEAI 250

Query: 273  THGITPPGIEYYLPLFFDETATLFDYLPGATHVFTADGLND---------AVSHFDSETR 323
            + GI   G+E++LPLF D   TLF Y+P A  V   D  +D          + +FD+   
Sbjct: 251  SEGIKFNGMEHWLPLFHDGLDTLFAYVPEAAVVL--DHQSDEALTARHALVLEYFDARAG 308

Query: 324  NRYEDRRHDRL--RPILPPKRLFLQQEELFGQLKAFPRVTVSAETKDAAGSVNCPTTTLP 381
                      +   PILP +RL+L++ E    L A P + +S                  
Sbjct: 309  LAGAGLTESGMVYHPILP-ERLYLERAEWDRLLAARPVLHLSP---------------FD 352

Query: 382  DIAMDGRAADPAGRLKRFLGEFDGH----------------------VLICAESSGRREA 419
             +  D  A D  GRL R   +                          V+I A + G R+ 
Sbjct: 353  AVEGDEGAVDAGGRLGRDFADMRARPGVNVYDCVREHAEEQAKAGRRVVIAAWTQGSRDR 412

Query: 420  LMENLGEQGVE-LKTLSGWQAFLDDKESSVAITIAPMEQGLVLPEHSVALITETALFGER 478
            L   L + G++ ++T+  W       +  VA+ +  ++ G   P+  +A+ITE  + G+R
Sbjct: 413  LAGVLRDHGIKGIETVESWAEAQGLDKGRVAVAVLGLDHGFATPD--LAVITEQDILGDR 470

Query: 479  VLQRRRREKPTETDDAGFRDLSELRIGAPVVHIDHGVGRYLGLETITVEGEASEFLMLGY 538
            + +  R++K      A   + S L  G  VVH++HG+GRY GL  + V G   + L + Y
Sbjct: 471  LARPARKKKKGAQFIA---EASALAEGDLVVHVEHGIGRYDGLVALEVSGAPHDCLRVLY 527

Query: 539  AGGSKLYVPVSSLHLISRYAGNDTEHAPLHKLGTDRWSTAKQKALEKIRDTAAELLDVYA 598
             GG KL+VPV ++ +++R+ G++     L KLG   W   K K  ++IRD A +L+ + A
Sbjct: 528  DGGDKLFVPVENIDVLTRF-GSEQAGVSLDKLGGTAWQARKAKLKKRIRDIADQLIGIAA 586

Query: 599  RREARKGFSFEDPKEAYRAFAAGFPFEETPDQQVAIQSVFEDMTSEQPMDRLVCGDVGFG 658
            +R+ R+G +    +  Y  F A FPF ET DQ  AI+    D+ S +PMDRL+CGDVGFG
Sbjct: 587  QRKMRQGEALVPAEGLYDEFCARFPFAETEDQMRAIEDSIADLASGKPMDRLICGDVGFG 646

Query: 659  KTEVAMRAAFLATWSGKQVAVLVPTTLLAQQHYESFRDRFSDTPVQVELLSRFRTAGQTS 718
            KTEVAMR AF+A   G QVAV+VPTTLLA+QHY +F++RFS  PV+VE LSR  TA   S
Sbjct: 647  KTEVAMRVAFVAALQGLQVAVVVPTTLLARQHYRTFKERFSGLPVRVEQLSRLVTAKTAS 706

Query: 719  KALEAVENGRADIVIGTHKLLQGDIKFKNLGLVIIDEEHRFGVQQKERLKALRAEVDMLN 778
            +    V +G  D+V+GTH LL   I FK LGL+IIDEE  FGV  KERLK L+A+V +L 
Sbjct: 707  EVKAGVADGSVDVVVGTHALLAKGIGFKRLGLLIIDEEQHFGVAHKERLKQLKADVHVLT 766

Query: 779  LTATPIPRTLNMAMGHLRDLSIIATPPARRLSVKTFVRQKDNAMVKEAILREILRGGQVY 838
            LTATPIPRTL MA+  ++++S+IATPP  RL+V+TFV   D  +++E+ILRE  RGGQV+
Sbjct: 767  LTATPIPRTLQMALSGVKEMSVIATPPIDRLAVRTFVLPYDPVVLRESILRERYRGGQVF 826

Query: 839  FLHNDVATIEKTAEDLRSLIPEARVGVAHGQMRERDLEKIMSDFYHKRFNVLVCTTIIET 898
            ++   +A I++ AE L  L+PE +  VAHG++   DLE++M  F  K+++VL+ T IIE+
Sbjct: 827  YVCPRLADIDRVAERLAKLVPEVKTAVAHGRLAPADLEEVMVAFGEKQYDVLLSTNIIES 886

Query: 899  GIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKSITADAKKRLDAI 958
            GID+PS NT+II RAD FGL QL+QLRGRVGR   + YAY   P  K ++  A+KRL  +
Sbjct: 887  GIDMPSVNTLIIHRADMFGLGQLYQLRGRVGRGKTRGYAYFTLPNDKVLSKAAEKRLQVM 946

Query: 959  SEAQDLGAGFMLATHDLEIRGAGELLGEEQSGQIESIGFTLYMQLLDEAVKAIREGRTPN 1018
                 LGAGF LA+HDL+IRGAG LLGEEQSG I  +G  LY QLL+EAV A + G+   
Sbjct: 947  QALDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIREVGVELYQQLLEEAVAAAKGGQGGE 1006

Query: 1019 ADLPLSHGTEMNLRIPALIPEDYLPDVHNRLMLYKRIASVDSPEALKELQVEMIDRFGLL 1078
            A    S   ++ +  P LIPE Y+ D+  RL LY+RI S+     ++ L  E+IDRFG L
Sbjct: 1007 AAEEWS--PQIAVGTPVLIPETYVADLSVRLSLYRRIGSLADQAEIEALAAELIDRFGKL 1064

Query: 1079 PDPAKNLIRQTELRLRAEALGIVKVDAGKEWARLEFGSSTPVDPLVLVKKVQSAPDQYRL 1138
            P   +NL+    ++   +  GI KVD+G + A +    +   +P  LV+ +  +    ++
Sbjct: 1065 PPEVENLLEVVAIKALCKLAGIDKVDSGPKGAVVSLRGNVFANPAALVQFIARSAGSCKI 1124

Query: 1139 EGANSFRFRLKDATTGGKLDGISRMLGEL 1167
               +   F         ++ G+  ++G+L
Sbjct: 1125 RPDHKIVFLRAWEDPKQRIVGLRNVIGKL 1153