Pairwise Alignments

Query, 1177 a.a., transcription-repair-coupling factor from Marinobacter adhaerens HP15

Subject, 1164 a.a., transcription-repair coupling factor from Escherichia coli ECRC100

 Score = 1198 bits (3099), Expect = 0.0
 Identities = 620/1152 (53%), Positives = 811/1152 (70%), Gaps = 21/1152 (1%)

Query: 20   PSRPADHRTWGQLHGSSEALAICESARAHKGLTLVITRSTADAIRLEQAMRFFLGLPPEE 79
            P +  + R  G+L G++ A  + E A  H G  ++I     +A+RL   +  F       
Sbjct: 26   PVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM--- 82

Query: 80   DGPAVSDDGLELLSLPDWETLPYDLFSPHQDIISRRIRTLHRLPATSHGVLVVPARTLMH 139
                       +++L DWETLPYD FSPHQDIIS R+ TL++LP    GVL+VP  TLM 
Sbjct: 83   -----------VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 131

Query: 140  RLPPVNYLQGNTLLLEVGQSLDIESWRMQLEAAGYRHAENVYEHGEYAVRGAILDIFPMG 199
            R+ P ++L G+ L++E GQ L  ++ R QL++AGYRH + V EHGEYA RGA+LD+FPMG
Sbjct: 132  RVCPHSFLHGHALVMEKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 191

Query: 200  ASQPFRIDLFDDEIETLRTFDPETQRSIDRIERIELLPAFEFPWHKEARSGFRSRWFEQF 259
            +  P+R+D FDDEI++LR FD ++QR+++ +E I LLPA EFP  K A   FRS+W + F
Sbjct: 192  SELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF 251

Query: 260  PDADKDTPIYQDVTHGITPPGIEYYLPLFFDETAT-LFDYLPGATHVFTADGLNDAVSHF 318
                    IYQ V+ G  P GIEY+ PLFF E    LF Y P  T +     L ++   F
Sbjct: 252  EVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLENSAERF 311

Query: 319  DSETRNRYEDRRHDRLRPILPPKRLFLQQEELFGQLKAFPRVTVSAE-TKDAAGSVNCPT 377
             ++T  R+E+R  D +RP+LPP+ L+L+ +ELF +LK +PRV +  E     A + N   
Sbjct: 312  QADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGF 371

Query: 378  TTLPDIAMDGRAADPAGRLKRFLGEFDGHVLICAESSGRREALMENLGEQGVELKTLSGW 437
              LPD+A+  +   P   L++FL  FDG V+   ES GRREAL    GE    +K     
Sbjct: 372  QKLPDLAVQAQQKAPLDALRKFLESFDGPVVFSVESEGRREAL----GELLARIKIAPQR 427

Query: 438  QAFLDD-KESSVAITIAPMEQGLVLPEHSVALITETALFGERVLQRRRREKPTETDDAGF 496
               LD+  +    + I   E G V    ++ALI E+ L GERV +RR+  + T   D   
Sbjct: 428  IMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLI 487

Query: 497  RDLSELRIGAPVVHIDHGVGRYLGLETITVEGEASEFLMLGYAGGSKLYVPVSSLHLISR 556
            R+L+EL IG PVVH++HGVGRY G+ T+   G   E+LML YA  +KLYVPVSSLHLISR
Sbjct: 488  RNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISR 547

Query: 557  YAGNDTEHAPLHKLGTDRWSTAKQKALEKIRDTAAELLDVYARREARKGFSFEDPKEAYR 616
            YAG   E+APLHKLG D WS A+QKA EK+RD AAELLD+YA+R A++GF+F+  +E Y+
Sbjct: 548  YAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQ 607

Query: 617  AFAAGFPFEETPDQQVAIQSVFEDMTSEQPMDRLVCGDVGFGKTEVAMRAAFLATWSGKQ 676
             F   FPFE TPDQ  AI +V  DM     MDRLVCGDVGFGKTEVAMRAAFLA  + KQ
Sbjct: 608  LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQ 667

Query: 677  VAVLVPTTLLAQQHYESFRDRFSDTPVQVELLSRFRTAGQTSKALEAVENGRADIVIGTH 736
            VAVLVPTTLLAQQHY++FRDRF++ PV++E+LSRFR+A + ++ L  V  G+ DI+IGTH
Sbjct: 668  VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEVAEGKIDILIGTH 727

Query: 737  KLLQGDIKFKNLGLVIIDEEHRFGVQQKERLKALRAEVDMLNLTATPIPRTLNMAMGHLR 796
            KLLQ D+KFK+LGL+I+DEEHRFGV+ KER+KA+RA VD+L LTATPIPRTLNMAM  +R
Sbjct: 728  KLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMR 787

Query: 797  DLSIIATPPARRLSVKTFVRQKDNAMVKEAILREILRGGQVYFLHNDVATIEKTAEDLRS 856
            DLSIIATPPARRL+VKTFVR+ D+ +V+EAILREILRGGQVY+L+NDV  I+K AE L  
Sbjct: 788  DLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAE 847

Query: 857  LIPEARVGVAHGQMRERDLEKIMSDFYHKRFNVLVCTTIIETGIDVPSANTIIIERADKF 916
            L+PEAR+ + HGQMRER+LE++M+DF+H+RFNVLVCTTIIETGID+P+ANTIIIERAD F
Sbjct: 848  LVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 907

Query: 917  GLAQLHQLRGRVGRSHHQAYAYLLTPPPKSITADAKKRLDAISEAQDLGAGFMLATHDLE 976
            GLAQLHQLRGRVGRSHHQAYA+LLTP PK++T DA+KRL+AI+  +DLGAGF LATHDLE
Sbjct: 908  GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLE 967

Query: 977  IRGAGELLGEEQSGQIESIGFTLYMQLLDEAVKAIREGRTPNADLPLSHGTEMNLRIPAL 1036
            IRGAGELLGEEQSG +E+IGF+LYM+LL+ AV A++ GR P+ +   S  TE+ LR+P+L
Sbjct: 968  IRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSL 1027

Query: 1037 IPEDYLPDVHNRLMLYKRIASVDSPEALKELQVEMIDRFGLLPDPAKNLIRQTELRLRAE 1096
            +P+D++PDV+ RL  YKRIAS  +   L+E++VE+IDRFGLLPDPA+ L+    LR +A+
Sbjct: 1028 LPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQ 1087

Query: 1097 ALGIVKVDAGKEWARLEFGSSTPVDPLVLVKKVQSAPDQYRLEGANSFRFRLKDATTGGK 1156
             LGI K++  ++   +EF     V+P  L+  +Q  P  YRL+G    +F    +    +
Sbjct: 1088 KLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTR 1147

Query: 1157 LDGISRMLGELE 1168
            ++ + + + ELE
Sbjct: 1148 IEWVRQFMRELE 1159