Pairwise Alignments

Query, 626 a.a., sigma-54 dependent transcriptional regulator from Marinobacter adhaerens HP15

Subject, 631 a.a., no description from Variovorax sp. SCN45

 Score =  320 bits (820), Expect = 1e-91
 Identities = 226/622 (36%), Positives = 324/622 (52%), Gaps = 47/622 (7%)

Query: 13  IADSWNRCIAWGLDHDH-EPAPLKPEPARLEEINRQHSELLSVTEAEVLPYYRNVLSNSR 71
           I+ SW R  +  +DH + +PAP+    A L E   Q   LL   + E+     + + N  
Sbjct: 33  ISRSWQR--SRPVDHQYIDPAPMAL--ALLRERREQSMRLLDCAQPELDGLAEHAIGNG- 87

Query: 72  CLILLADQHATVLSSWGDERITETRLKPWFQTGANWQEQNCGTNAIGTSIAVGGPVQIQR 131
           C+++L+D    +L   G         +   Q G  W E N GTNAIGT++A    + +  
Sbjct: 88  CVVILSDASGLILEEIGSPDFLPKAERIALQPGVEWSENNRGTNAIGTALAEREALMVLG 147

Query: 132 NEHFLKTNRSIIGSAAPIFDAHRQIAGVLSVFSDAYLPQAHTLGMVRLLSQSVENRLINR 191
            EH+L  N ++  +AAPIF    ++AG L +  +      H LG+VR+ +Q VE+R++  
Sbjct: 148 GEHYLAQNGALGCAAAPIFTGRGELAGALDISGETVRVNTHALGLVRMAAQQVEHRMLLA 207

Query: 192 QFGPDHFQITLNTTADNFDSPWSGILVCDDSGQVIASNQRADQLLGMN-----TVEAR-- 244
           +       +  +       +   G++V +  G+++A+N+ A +L G +      +EAR  
Sbjct: 208 E--AQGHVLRFHARPALIGTAREGLMVIE-GGRIVAANRVALELFGRSWDGLLDLEARDF 264

Query: 245 LDELFTR--HRNHILGHPETETLQ-LTTRSKVRLSAR-IKRPTRIPDANGKTKPSPVPED 300
           L   + R  HR  +L  P    +  +  R+  R  AR + R    P A G          
Sbjct: 265 LGPNWPRMEHRRSLLTLPGGRQIATVMERTSTRGGARPMARRADAPAATG---------- 314

Query: 301 LRQSARPLDIDNLDYGDSAVKRCATQSLKVLERGLPVLITGETGVGKEVLVKALHRASHR 360
              +ARP   D L   D AV+        VL  G+ VL+ GETG GKEV  + LH AS R
Sbjct: 315 ---AARPEADDILPLLDKAVR--------VLNEGVSVLVNGETGSGKEVFSRRLHAASRR 363

Query: 361 KDQPLVAVNCAAIPPELVESELFGYEAGAFTGARAQGSLGFIRKAHKGVLFLDEIGEMPL 420
              P VAV+CA++P  L+ESELFGY+ GAFTGAR +G  G IR+AH GVLFLDEI E+PL
Sbjct: 364 AAGPFVAVDCASLPETLIESELFGYDEGAFTGARRKGMAGRIREAHGGVLFLDEIAEIPL 423

Query: 421 SAQSRLLRVLQERVVTPVGSTDSVPVDILLVTATNRPLTTRIENGHFRADLYYRINGLCV 480
           + Q+RLLRVL+ERVVTP+G    V VD  LV AT+  L   ++ G FRADL YR+ G  V
Sbjct: 424 ALQTRLLRVLEERVVTPLGGGQGVAVDFDLVCATHGDLPALVKAGRFRADLMYRVAGFTV 483

Query: 481 ELPALRNRADRRMLIQSLYARHRDPGQSEQLSPKVLSALEAHPWPGNIRQLVNVLRVAIA 540
            LP L  RADR  LI  L+       +  +L    L AL A+ WPGN+R+L + LR  +A
Sbjct: 484 ALPPLSRRADRHTLIARLFLESGGAAKHLRLESDALEALAAYRWPGNVRELRSTLRAVVA 543

Query: 541 IAD-GEQVQVWHLPEDFLAEFEANPLEQSDPPMQEQPVAGS-EAETEDTLARTLQIYRKC 598
           +AD G+ V    LP   L    A P   +       P AG  +A T   +   L   + C
Sbjct: 544 LADTGDSVTAAALPAHLLGT-HAAPTTDAATEAALAPQAGPLQAITRHAIDEAL---KAC 599

Query: 599 TGNISQAARELSISRNTLYKRL 620
             ++S+AAR L + R+T+Y+ +
Sbjct: 600 DHDVSKAARRLGVHRSTVYRHI 621