Pairwise Alignments

Query, 626 a.a., sigma-54 dependent transcriptional regulator from Marinobacter adhaerens HP15

Subject, 635 a.a., sigma-54-dependent Fis family transcriptional regulator from Pseudomonas fluorescens SBW25

 Score =  333 bits (855), Expect = 1e-95
 Identities = 229/631 (36%), Positives = 343/631 (54%), Gaps = 47/631 (7%)

Query: 13  IADSWNRCIA-WGLDHDHEPAPLKPEPARLEEINRQHSELLSVTEAEVLPYYRNVLSNSR 71
           IA SW RC+  + LD     AP   E  RL E   +  ++L +  +E+   ++  LS + 
Sbjct: 28  IARSWLRCLEDYHLDPAQTIAPTVLEHGRLLESRERLQQVLHIAGSEMNSLHQQ-LSGAG 86

Query: 72  CLILLADQHATVLS--SWGDERITETRLKPWFQTGANWQEQNCGTNAIGTSIAVGGPVQI 129
             +LL D    +L+  +   ER    R   W   GA+W E   GTN IGT +     + I
Sbjct: 87  HAVLLTDARGVILNCVTAPSERKIFERAGLWL--GADWSEACEGTNGIGTCLVERQSLTI 144

Query: 130 QRNEHFLKTNRSIIGSAAPIFDAHRQIAGVLSVFSD----AYLPQAHTLGMVRLLSQSVE 185
            R+EHF   +  +  SA+P+FD H  +  VL V S     +   Q HT+ +V L ++ +E
Sbjct: 145 HRDEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSAREAVSRQSQFHTMALVNLSAKMIE 204

Query: 186 NRLINRQFGPDHFQITLNTTADNFDSPWSGILVCDDSGQVIASNQRADQLLGM---NTVE 242
           +    R F   H+ +  +  A++      G+L  D +G++ A NQ A  LLG      + 
Sbjct: 205 SCYFLRHF-EHHWLLRFHLQAESVGLFSEGLLAFDGNGRICAVNQSALNLLGQLRGGLLG 263

Query: 243 ARLDELFTRHRNHILGHPE---TETLQLTTRSKVRLSARIKRPTRIPDANGKTKPSPVPE 299
             ++  F    + +LG      T +  L TR    L A ++   R       + P+PV  
Sbjct: 264 QPVEAFFECSLDQLLGRASANATASWPLRTRDGRPLFAALRGQAR-------SVPAPV-- 314

Query: 300 DLRQSARPLDIDN-----LDYGDSAVKRCATQSLKVLERGLPVLITGETGVGKEVLVKAL 354
                ARP  ++      +  GD A++R  +++L+V ER +P+LI GETG GKE   KA+
Sbjct: 315 -----ARPAVVERPRLPGICLGDPALQRDFSKALRVFERDVPLLINGETGSGKEAFAKAV 369

Query: 355 HRASHRKDQPLVAVNCAAIPPELVESELFGYEAGAFTGARAQGSLGFIRKAHKGVLFLDE 414
           H+AS R D+  VA+NCAAIP  L+ESELFGY  G+FTGAR +G  G +++A  G LFLDE
Sbjct: 370 HQASQRADKAFVALNCAAIPESLIESELFGYRGGSFTGARKEGMQGKLQQADGGTLFLDE 429

Query: 415 IGEMPLSAQSRLLRVLQERVVTPVGSTDSVPVDILLVTATNRPLTTRIENGHFRADLYYR 474
           IG+MPL+ Q+RLLRVL++R+V P+G  +   V++ +++AT+R L  R+++G FR DLYYR
Sbjct: 430 IGDMPLALQTRLLRVLEDRLVVPLGG-EPQAVNVRIISATHRNLLERVQDGSFREDLYYR 488

Query: 475 INGLCVELPALRNRADRRMLIQSLYARHRDPGQSEQLSPKVLSALEAHPWPGNIRQLVNV 534
           +NGL V LPALR R+D+  L+  L A+  + G++  L P    AL A  WPGN+RQL  V
Sbjct: 489 LNGLEVGLPALRERSDKSQLLDFLLAQEAN-GEAVALDPAARMALLAFAWPGNVRQLRTV 547

Query: 535 LRVAIAIADGEQVQVWHLPEDFLAEFEANPLEQSDPPMQEQPVAGSEAETEDTLARTLQI 594
           LR  +A+ D  +V +  LP       +A P+  +     E P+  +E      L   LQ 
Sbjct: 548 LRTLVALCDEGRVALEDLPAQIR---QARPVAAAQARPAESPLEDAE---RLALLTALQQ 601

Query: 595 YRKCTGNISQAARELSISRNTLYKRLREMGV 625
            R    +++  A +L +SRNTLY++LR  G+
Sbjct: 602 QR---WHMTHTAEQLGVSRNTLYRKLRRHGI 629