Pairwise Alignments

Query, 626 a.a., sigma-54 dependent transcriptional regulator from Marinobacter adhaerens HP15

Subject, 603 a.a., sigma-54-dependent Fis family transcriptional regulator from Pseudomonas fluorescens SBW25

 Score =  577 bits (1487), Expect = e-169
 Identities = 305/614 (49%), Positives = 404/614 (65%), Gaps = 22/614 (3%)

Query: 11  SVIADSWNRCIAWGLDHDHEPA-PLKPEPARLEEINRQHSELLSVTEAEVLPYYRNVLSN 69
           ++I +SW RC A+GLDH   P+    P     + +  QHS L+  T  EVLPYY N+LSN
Sbjct: 9   TLIQESWRRCRAFGLDHQSTPSFDQLPAEGISQLLESQHS-LVQTTHQEVLPYYENILSN 67

Query: 70  SRCLILLADQHATVLSSWGDERITETRLKPWFQTGANWQEQNCGTNAIGTSIAVGGPVQI 129
           S CLI+LAD    VL+SWG +R  E +L   F  GA+W+E++ GTNAIGT++A    V I
Sbjct: 68  SNCLIMLADNQGQVLTSWGTQRFIEPKLARGFNPGASWRERSSGTNAIGTALACAQAVHI 127

Query: 130 QRNEHFLKTNRSIIGSAAPIFDAHRQIAGVLSVFSDAYLPQAHTLGMVRLLSQSVENRLI 189
           + +EHFLK NR + GSAAPIFDA R+I  VL V SD+YLP +HTLGMV+++SQ+VENRLI
Sbjct: 128 EHDEHFLKANRFMTGSAAPIFDAQREIIAVLDVSSDSYLPPSHTLGMVKMMSQTVENRLI 187

Query: 190 NRQFGPDHFQITLNTTADNFDSPWSGILVCDDSGQVIASNQRADQLLGMNTVEARLDELF 249
              F  +HFQ+T NT   N DS W+G+L+ D+SGQV+++N+RAD LLG++     +D LF
Sbjct: 188 LNLFRGEHFQLTFNTGLSNLDSQWAGLLIFDESGQVLSANRRADNLLGISLSRVMIDSLF 247

Query: 250 TRHRNHILGHPETETLQLTTRSKVRLSARIKRPTRIP-DANGKTKPSPVPEDLRQSARPL 308
                 +L  PE     L    + R    ++RP ++P  A   T+P+P           +
Sbjct: 248 KVSLLELLNQPEGLPFSLQAAGRNRFQCLLRRPKQVPVQARVFTEPTP------PKPASI 301

Query: 309 DIDNLDYGDSAVKRCATQSLKVLERGLPVLITGETGVGKEVLVKALHRASHRKDQPLVAV 368
            +  L +GD  V++   Q+ ++LE+ +P+LI GETGVGKEV VKALH+AS R  +  +AV
Sbjct: 302 GLKTLHFGDVRVEKAVRQAERLLEKDIPLLIHGETGVGKEVFVKALHQASSRSQKAFIAV 361

Query: 369 NCAAIPPELVESELFGYEAGAFTGARAQGSLGFIRKAHKGVLFLDEIGEMPLSAQSRLLR 428
           NCAAIP ELVESELFGYE GAFTGA  +GS+G IRKA KG LFLDEIG+MPL  Q+RLLR
Sbjct: 362 NCAAIPAELVESELFGYEKGAFTGANQKGSIGLIRKADKGTLFLDEIGDMPLPTQARLLR 421

Query: 429 VLQERVVTPVGSTDSVPVDILLVTATNRPLTTRIENGHFRADLYYRINGLCVELPALRNR 488
           VLQER V PVGS++  PVD+ +++ATNR L   ++ G FR DLYYRI GL +ELP LR R
Sbjct: 422 VLQERCVQPVGSSELFPVDLRIISATNRALRELVQAGRFREDLYYRIGGLTLELPPLRER 481

Query: 489 ADRRMLIQSLYARHRDPGQSEQLSPKVLSALEAHPWPGNIRQLVNVLRVAIAIADGEQVQ 548
            D+R L Q L+ +HR+P Q   LS +VL+  E HPWPGN+RQ+ +VL+VA+A+A+ + ++
Sbjct: 482 TDKRALFQQLWQQHREPTQWAGLSAEVLALFEQHPWPGNLRQVSSVLQVALAMAEEQPIR 541

Query: 549 VWHLPEDFLAEFEANPLEQSDPPMQEQPVAGSEAETEDTLARTLQIYRKCTGNISQAARE 608
             HLP+DF  +              E P+  S  E  D      Q  +   GNIS  ARE
Sbjct: 542 PEHLPDDFFVDLNV-----------ESPLPAS--EYLDASIDLNQRLKAVGGNISHLARE 588

Query: 609 LSISRNTLYKRLRE 622
           L +SRNTLYKRLR+
Sbjct: 589 LGVSRNTLYKRLRQ 602