Pairwise Alignments

Query, 626 a.a., sigma-54 dependent transcriptional regulator from Marinobacter adhaerens HP15

Subject, 627 a.a., transcriptional regulator from Agrobacterium fabrum C58

 Score =  289 bits (739), Expect = 3e-82
 Identities = 212/638 (33%), Positives = 302/638 (47%), Gaps = 60/638 (9%)

Query: 11  SVIADSWNRCI-AWGLDHDHEPAPLKPEPARLEEINRQHSELLSVTEAEVLPYYRNVLSN 69
           +V+ +SW RC+  + LD       +     RL E  +Q  +LL +  + +   YR V + 
Sbjct: 23  AVVLESWRRCLDTYQLDPTKAREAVIVSETRLREHRQQAEDLLHIARSGLERLYRQV-AE 81

Query: 70  SRCLILLADQHATVLSSWGDERITETRLKPWFQTGANWQEQNCGTNAIGTSIAVGGPVQI 129
              ++LL+D+    +   GD        K     G+ W E   GT A+G  IA G  + I
Sbjct: 82  QNYVLLLSDRQGVTVEFLGDPSFNNNLRKAGLYLGSEWSEPRAGTCAVGACIATGESLTI 141

Query: 130 QRNEHFLKTNRSIIGSAAPIFDAHRQIAGVL--SVFSDAYLPQAHTLGMVRLLSQSVEN- 186
            + +HF  T+  +  +AAPI+D    +  VL  S+ S   L  +  +    L+S +V   
Sbjct: 142 HQTDHFDVTHTPLSCTAAPIYDTQGALTAVLDISLLSSPILKTSQNMAR-HLVSSTVRRI 200

Query: 187 RLINRQFGPDHFQITLNTTADNF-DSPWSGILVCDDSGQVIASNQRADQLLGMNT-VEAR 244
            L N      H  +     A  F D      L  D SG++      A +LL  +  ++ R
Sbjct: 201 ELANLMASSRHDLVLRFAGAPEFLDVDPEAALSVDGSGRITGMTHAAARLLAASRGLDWR 260

Query: 245 LDELFTRHRNHILGHPETETLQLTTRSKVRLSARI----------------KRPTRIPDA 288
           + E     R         + L   TRS +    RI                +R + +P A
Sbjct: 261 MPERLLGQRVEEFFEAGLDELASLTRSSLPQDRRIVVRDGTVLYAHAIEPQQRRSSVPLA 320

Query: 289 NGKTKPSPVPEDLRQSARPLDIDNLDYGDS-AVKRCATQSLKVLERGLPVLITGETGVGK 347
             ++KP PV E +              GD  AV+    +  K+    LP+L+ G+TG GK
Sbjct: 321 --RSKPQPVTERIG-------------GDGPAVRNLRRKVEKLSPARLPILLQGQTGTGK 365

Query: 348 EVLVKALHRASHRKDQPLVAVNCAAIPPELVESELFGYEAGAFTGARAQGSLGFIRKAHK 407
           E L + +H AS    +  VAVNCAAIP +L+ESELFGY  GAFTGA A+G  G + +A  
Sbjct: 366 EHLARIIHDASGVSGR-FVAVNCAAIPEQLIESELFGYLPGAFTGALAKGRKGLVEEAQG 424

Query: 408 GVLFLDEIGEMPLSAQSRLLRVLQERVVTPVGSTDSVPVDILLVTATNRPLTTRIENGHF 467
           G LFLDEIG+MP +AQSRLLRVL E  V PVG +    VD  +++A++RPL   +  G F
Sbjct: 425 GTLFLDEIGDMPFAAQSRLLRVLAEGEVLPVGGSTPQKVDFRVISASHRPLNDMVRTGAF 484

Query: 468 RADLYYRINGLCVELPALRNRADRRMLIQSLYARHRDPGQSEQLSPKVLSALEAHPWPGN 527
           R DLYYR+N   + LPAL  R D   L+  +  +H  PG+   LS      +  H WPGN
Sbjct: 485 REDLYYRLNAAVLTLPALSERDDFPWLLDRILEKHGMPGRPLTLSNAARLTILHHRWPGN 544

Query: 528 IRQLVNVLRVAIAIADGEQVQVWHLPEDFLAEFEANPLEQSDPPMQEQPVAGSEAETEDT 587
           IR+L N +  A A+ D   + V  LPE                P    P+  S      T
Sbjct: 545 IRELDNAIAFAAALCDDGLITVEDLPEQL-------------TPASSTPMIDSRG----T 587

Query: 588 LARTLQIYRKCTGNISQAARELSISRNTLYKRLREMGV 625
             R L     C GNIS+AAR L + R TL++R+R +G+
Sbjct: 588 DLRAL--LAACNGNISEAARRLGVDRTTLHRRMRRLGI 623