Pairwise Alignments

Query, 392 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

Subject, 441 a.a., fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein (NCBI) from Escherichia coli BW25113

 Score =  288 bits (738), Expect = 2e-82
 Identities = 160/386 (41%), Positives = 238/386 (61%), Gaps = 6/386 (1%)

Query: 6   VLIIDDEKNLVSSLMFSLEEEGMTVFAAYDGKSGLTEIEKRTPDVVLLDLKLPDQSGFEV 65
           +L++DD+ +  + L   L   G  V  A  G+  L ++ ++  D+VL D+++ +  G   
Sbjct: 8   ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIAT 67

Query: 66  LDQVQAL-PAPPITIMISAHGDTRAAVEAVKKGAQDYITKPFDLDELILLIQRNHKHRQL 124
           L +++AL PA P+ IM +A+     AVEA+K GA DY+ KP D D L   +++   H   
Sbjct: 68  LKEIKALNPAIPVLIM-TAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHS 126

Query: 125 TEEVAYRREREADVHGLVGHSSAMRKLLDQVERIGKSSARTVLLQGPSGSGKTLIAKALH 184
            +  A      A   G+VG S AM+ LL ++  +  S A TVL+ G SG+GK L+A+A+H
Sbjct: 127 ID--AETPAVTASQFGMVGKSPAMQHLLSEIALVAPSEA-TVLIHGDSGTGKELVARAIH 183

Query: 185 ATKDRAA-PFVSVNCASLPENLLEAELFGAEKGAYTGADKRRTGLVELANGGTLFLDEIG 243
           A+  R+  P V++NCA+L E+LLE+ELFG EKGA+TGADKRR G    A+GGTLFLDEIG
Sbjct: 184 ASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243

Query: 244 ELPLPLQAKLLTFLETHRFRAVGGQKEIEADLRVIAASNRDLQTEAQTGAFREDLFYRLN 303
           ++   +Q +LL  ++    + VG  + I  D+R+IAA++RDL  E   G FR+DL+YRLN
Sbjct: 244 DISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN 303

Query: 304 VMPLTIPSLAERRDDIPMLASNFATGLAAQEGCRPINLSSETLTTLCNYDWPGNIRELRN 363
           V+ + +PSL +RR+DIP+LA +F    A +        + + +  L +YDWPGNIREL N
Sbjct: 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELEN 363

Query: 364 TIERLTILHAGESINVDQLPPEITKS 389
            +ER  +L  GE I+  +LP  I  +
Sbjct: 364 AVERAVVLLTGEYISERELPLAIAST 389