Pairwise Alignments

Query, 392 a.a., two component, sigma54 specific, transcriptional regulator, Fis family from Marinobacter adhaerens HP15

Subject, 461 a.a., fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein (NCBI) from Escherichia coli BW25113

 Score =  308 bits (788), Expect = 3e-88
 Identities = 165/385 (42%), Positives = 246/385 (63%), Gaps = 5/385 (1%)

Query: 6   VLIIDDEKNLVSSLMFSLEEEGMTVFAAYDGKSGLTEIEKRTPDVVLLDLKLPDQSGFEV 65
           +LI+DDE N+   L  +   +G     A +G++ L       PDVVL+D+++P+  G + 
Sbjct: 7   ILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKA 66

Query: 66  LDQVQALPAPPITIMISAHGDTRAAVEAVKKGAQDYITKPFDLDELILLIQRNHKHRQLT 125
           L ++++       I+++A+ +   AVEA++ GA DY+ KPFDLDEL L++QR  + + + 
Sbjct: 67  LKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSMK 126

Query: 126 EEVAYRREREADVHG---LVGHSSAMRKLLDQVERIGKSSARTVLLQGPSGSGKTLIAKA 182
           +E+ +  +  +       ++ +S AM  +     +I  S A +VL+ G SG+GK LIA+A
Sbjct: 127 KEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQA-SVLISGESGTGKELIARA 185

Query: 183 LHATKDRA-APFVSVNCASLPENLLEAELFGAEKGAYTGADKRRTGLVELANGGTLFLDE 241
           +H    RA  PF+ VNCA+LPE+LLE+ELFG EKGA+TGA   R GL E AN GTL LDE
Sbjct: 186 IHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDE 245

Query: 242 IGELPLPLQAKLLTFLETHRFRAVGGQKEIEADLRVIAASNRDLQTEAQTGAFREDLFYR 301
           IGE+PL LQAKLL  L+   F  +GG + I+ D+R+IAA+NRDLQ   + G FREDLFYR
Sbjct: 246 IGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYR 305

Query: 302 LNVMPLTIPSLAERRDDIPMLASNFATGLAAQEGCRPINLSSETLTTLCNYDWPGNIREL 361
           LNV+ L +P L +RR+DI +LA++F    +++     I++    ++ L  + WPGNIREL
Sbjct: 306 LNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIREL 365

Query: 362 RNTIERLTILHAGESINVDQLPPEI 386
            N IER  ++++G  I  + LPP+I
Sbjct: 366 SNVIERAVVMNSGPIIFSEDLPPQI 390