Pairwise Alignments

Query, 333 a.a., cytochrome d ubiquinol oxidase, subunit II from Marinobacter adhaerens HP15

Subject, 336 a.a., Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  233 bits (594), Expect = 5e-66
 Identities = 134/338 (39%), Positives = 199/338 (58%), Gaps = 30/338 (8%)

Query: 6   LPLIWAFIIGFGIIMYVLMDGFDLGVGILFPFAPNEEARDTMMNSVAPVWDGNETWLVLG 65
           LPLI+  ++G  ++ YV++DG+DLGVG+L P A ++E +DTM++S+ P WD NETWLVLG
Sbjct: 10  LPLIFLAVMGLALLAYVILDGYDLGVGLLLPLAESKEQKDTMISSIGPFWDANETWLVLG 69

Query: 66  GAGLLAAFPMVYSIFLPALYIGVFLLLAGLIFRGVAFEFRFKARTSRY-LWNWAFAGGST 124
              LL AFPM + + L ALY+ V ++L GLI RGVAF+FR KA T     WN AF  GS 
Sbjct: 70  VGVLLVAFPMAHGLVLQALYLPVAVMLIGLILRGVAFDFRVKAPTKYVPFWNRAFFVGSL 129

Query: 125 VASFAQGAVVGAYIQGFETANGVYVGGALDWL-TPFTVLTGLGMLAGYSLLGSTWLIMKT 183
           +AS +QG ++G+YI GF+            WL   F++   L + A Y LLG+ WLIMKT
Sbjct: 130 LASASQGWMLGSYITGFDKG----------WLGLSFSLGIALTLPAAYILLGAGWLIMKT 179

Query: 184 EGYLQ----QWAYKITLPLLLAVLVVFGIIGVWTPFVDEMVRERWFSNLSIIWVLPVLTL 239
           EG LQ    +WA ++  P+ +A++     I   TP V+  V  +WFS   +  ++P+  L
Sbjct: 180 EGELQAHAVRWAARVLWPMGVALVA----ISAATPLVNPGVVAKWFSVPEVFGLMPI-PL 234

Query: 240 LCAIQIY---------RSVRDRRDGMPFVATMGLFITTYLGLVVSRWPYVVPPEYTLWEA 290
            CAI  +           V+     + F AT+ +F+  + GL  S +P +V     +W+A
Sbjct: 235 SCAIAFFAVRWVVTHPNVVKAGYGWVVFAATVLIFVLAFFGLAYSIFPDIVIGRMNVWQA 294

Query: 291 ASAYESQLFLLLGLLFVIPIVLVYTAWTYWVFRGKVRA 328
           A +  S   + +G+   +P++++YT + Y VF GK RA
Sbjct: 295 AVSTGSLTVIFIGVAITLPVIIIYTIYMYRVFWGKARA 332