Pairwise Alignments

Query, 678 a.a., NAD-dependent DNA ligase from Marinobacter adhaerens HP15

Subject, 785 a.a., NAD-dependent DNA ligase LigA from Pseudomonas fluorescens SBW25

 Score =  618 bits (1593), Expect = 0.0
 Identities = 327/603 (54%), Positives = 420/603 (69%), Gaps = 27/603 (4%)

Query: 11  RVEELRSAIDDHNYRYYVLDDPRVPDAEYDRLFRELQGLETDYPELASDTSPTRRVGSAA 70
           R+ ELR+ +D HNYRY+VLD+P +PDAEYDRLF EL+ LE ++P+L +  SPT+RVGSAA
Sbjct: 7   RILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTRDSPTQRVGSAA 66

Query: 71  ETSFEEVVHRLPMLSLDNAFSEDELRDFDRRVKDRLGITED--------VEYVCEPKLDG 122
            ++F +V H +PMLSL NAF E  + +FDRRV + L +           VEY CEPKLDG
Sbjct: 67  LSAFTQVKHDIPMLSLGNAFDETTMLEFDRRVTEGLDLPVGDLFGGGAAVEYSCEPKLDG 126

Query: 123 LAVSLHYENGALTTAATRGDGYSGEDITANIRTIPSVPLKLRGDDVPDLVEVRGEVYMPK 182
           LAVSL Y++G L   ATRGDG +GEDI+ NIRT+ ++PLKL G   P  +EVRGEV+M K
Sbjct: 127 LAVSLLYQDGELVRGATRGDGTTGEDISVNIRTVRNIPLKLHGSGWPATLEVRGEVFMSK 186

Query: 183 DGFEQLNRRLAERGEKTFVNPRNAAAGSLRQKKSTVTARRPLEMCAYSVAVTDESLLPDT 242
            GFE+LN    E G KTF NPRNAAAGSLRQ  S +TA RPLE C Y V  TD S   DT
Sbjct: 187 AGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVT-TDIS---DT 242

Query: 243 QWEGLKRVQSWGFRINPEMRKARGAEECLEAYSELMDKRDGLPYEIDGIVFKVNRLDQQK 302
               L++++ WG  I+ E++ A+G ++CL+ Y ++ ++R+ LPYEIDG+VFKVN +  Q+
Sbjct: 243 HIGNLQQLKKWGMPISHELKLAKGIQDCLDYYRDIGERRNSLPYEIDGVVFKVNSIASQR 302

Query: 303 ALGFVSRAPRWAIAQKFPAQEELTVIEDVEFQVGRTGAVTPVARLKPVFVGGVTVSNATL 362
            LGF +R PRWAIA KFPA EELT + DVEFQVGRTGAVTPVARLKPV V GVTVSNATL
Sbjct: 303 ELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATL 362

Query: 363 HNMDEIRRLDVHIGDTVFIRRAGDVIPQVVKVVAEKRPSGAREVELPRQCPVCDSDVIQ- 421
           HNMDE+ RL + IGDTV IRRAGDVIPQVV VV E+RP  AR V++P  CPVC S V + 
Sbjct: 363 HNMDEVARLGLMIGDTVIIRRAGDVIPQVVSVVPERRPENARAVQIPESCPVCGSHVERT 422

Query: 422 -----------IEGEAVARCSGGLFCPAQRKEAIRHYASRKALDIEGLGDKWIDIMVDQG 470
                      +   AV RC G L C AQ K+AI H+ SR+A+DI+GLGDK I+ +VD+ 
Sbjct: 423 QLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQLVDEK 482

Query: 471 MVETVADLYRLTTDDLVKLERMGEKSAANLVAAIDRARNPVLWRFLYALGIREVGEATAK 530
           ++ + ADLY L  + ++ LE   + S+  L+ AI+ ++ P L RF+YALGI +VGE TAK
Sbjct: 483 LIGSPADLYTLKYEQIIDLEGFADISSKKLITAIENSKTPTLARFIYALGIPDVGEETAK 542

Query: 531 ALAGHFGTLEAIAAADEESLQTVPDVGPIVAGHIRSFFEQTHNRETLDAL---REAGVRW 587
            LA    +LE +  A  E L  +PDVG  VA  I SFFE +HN++ + AL   +  G++ 
Sbjct: 543 VLARSLASLERVQKALPEVLTYLPDVGLEVAHEIHSFFEDSHNQDVIGALLSPQACGLQL 602

Query: 588 QEE 590
           Q++
Sbjct: 603 QDQ 605



 Score =  124 bits (310), Expect = 2e-32
 Identities = 84/194 (43%), Positives = 108/194 (55%), Gaps = 15/194 (7%)

Query: 487 VKLERMGEKSAANLVAAIDRARNPVLWRFLYALGIREVGEATAKALAGHFGTLEAIAAAD 546
           ++L+  GE SA       + A +  L   L  L +  VG   A+ LA  F TLE +  AD
Sbjct: 600 LQLQDQGELSA-------EFAASTTLGGLLDKLHVPSVGPGAAQKLADKFVTLEGVIKAD 652

Query: 547 EESL-QTVPDVGPIVAGHIRSFFEQTHNRETLDA----LREAGVRWQEEEVREGEKPLKG 601
              + Q +P+     A  +R FF+   N     A    L++ G+ W  E+      P  G
Sbjct: 653 WLDMRQALPEKQ---AKAVREFFDNADNANHALAIEQQLKDFGMHWDSEKKVVEGLPEAG 709

Query: 602 QTWVLTGTLSGMTRDEAKEKLESLGAKVAGSVSKKTACVVAGEAAGSKLAKAEQLEVPVL 661
            TWVLTG+L  M+RD AK+KLESLGAKVAGSVS KT CVVAG  AGSKLAKA +L + VL
Sbjct: 710 HTWVLTGSLELMSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVL 769

Query: 662 DEAGLVALLEEHGL 675
           DE   VA L +H +
Sbjct: 770 DEEAFVAFLAKHNI 783