Pairwise Alignments

Query, 624 a.a., preprotein translocase subunit SecD from Marinobacter adhaerens HP15

Subject, 604 a.a., Protein-export membrane protein SecD (TC 3.A.5.1.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  521 bits (1341), Expect = e-152
 Identities = 280/616 (45%), Positives = 424/616 (68%), Gaps = 22/616 (3%)

Query: 12  VILVALVIGFIYALPNLFPDDYAIQITGARSSTEVNAGVLDRAVGVLESRGIEVKSSTLQ 71
           +++V +++G +YALPNL+ +D A+QITG R     +   L +    L+   I  KS  L+
Sbjct: 1   MLVVVIIVGLLYALPNLYGEDPAVQITGVRG-VAASEQTLIQVQKTLQEEKIPAKSVALE 59

Query: 72  DRDALIRLTNSEDQLQARPLVQAALGNEYLVALNMAASTPGWLKSLGAGPMKLGLDLRGG 131
           +   L R   ++ QL+AR  + + LG++Y+VALN+A +TP WL ++ A PMKLGLDLRGG
Sbjct: 60  EGAILARFDTTDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLRGG 119

Query: 132 VHFLLEVDMETAVSQRLDAMSGQIKRELREERIRYRGGDVQDNREIVLSFRDEASRTEAF 191
           VHFL+EVD++TA+ +  +     ++ +LRE+ I Y     ++N  + ++FRD  +R EA 
Sbjct: 120 VHFLMEVDIDTALGKLQEQNIDSLRSDLREKGIPYTTVRKENNYGLSITFRDSKARDEAI 179

Query: 192 NMVRDQYNEFLLDEQTEGDEFLLVLTLSEAEVTAIQDYALEQNLTTIRNRVNELGVAEPL 251
             +  ++ + ++  Q+ G++   V+T  +A ++  ++YA++QN+  +RNRVN+LGVAEP+
Sbjct: 180 AYLTPRHRDLVISSQS-GNQLRAVMT--DARLSEAREYAVQQNINILRNRVNQLGVAEPV 236

Query: 252 VQQQGADRIIVELPGVQDTAQAKRVLGATANLEFRM-EARQDAPSSETEEFGFRDQPQRT 310
           VQ+QGADRI+VELPG+QDTA+AK +LGATA LEFR+     D  ++         + ++T
Sbjct: 237 VQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQT 296

Query: 311 AR-----LEQEVIATGNNVANAQQAFDENGQPQVNITMDSVGGDLMNRATRNAIGRRMAV 365
                  L + VI TG+++ ++  + DE  QPQVNI++DS GG++M+  T++ IG+ MA 
Sbjct: 297 REGQPVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMAT 356

Query: 366 LFIEYRTETETRMVDGEPQEVENRVV---EKGIISLATVQSALGSSFRITGLDSIPEAAE 422
           LF+EY+        D   ++   R V   ++ +I++A +QS LG+SFRITG+ +  EA +
Sbjct: 357 LFVEYK--------DSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGISNPNEARQ 408

Query: 423 LALLLRAGALAAPMYFVQERTIGPSLGQKNIDAGMMSVALGFGLVLLYMLVYYRGFGVVA 482
           L+LLLRAGAL AP+  V+ERTIGP+LG +NI  G+ +   G  + +L+M+ +Y+ FG++A
Sbjct: 409 LSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYKKFGLIA 468

Query: 483 NIALTLNLMLLVACMSIL-SATLTLPGIAGIVLTVGMAVDANVLIFERIKEELKSGVPPQ 541
             AL  NL+L+V  MS+L  ATL++PGIAGIVLT+ +AVDANVLI ERIKEEL +G   Q
Sbjct: 469 TSALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQ 528

Query: 542 TAINSGYSRAFVSIFDANITTLLVAVILFAMGSGPVKGFAVTLCIGILTSMFSGLMVSRS 601
            AIN GY+ AF SIFDANITTL+  +IL+A+G+G +KGFA+T  IG+ TSMF+ ++ +R+
Sbjct: 529 QAINEGYAGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRA 588

Query: 602 IVNIVYGGRRVEKLSI 617
           IVN++YGG+RV KLSI
Sbjct: 589 IVNLLYGGKRVTKLSI 604