Pairwise Alignments

Query, 188 a.a., site-specific integrase from Magnetospirillum magneticum AMB-1

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score = 44.3 bits (103), Expect = 2e-09
 Identities = 50/188 (26%), Positives = 76/188 (40%), Gaps = 20/188 (10%)

Query: 5   KVLSEAELKRVLSVVANQRHAA-RNRVALMLSFYAGMRVGEIAHLKLGDVIDGDGRVKDQ 63
           K LSEA+++ +LS    Q     R++  L L +  G+RV E+  L + ++    G V+  
Sbjct: 115 KDLSEAQVEALLSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVRVM 174

Query: 64  IVLPASYTKTAEARTVFVSGKLRRELERFLSCNT-------TTDRAAPFLVTQKATAFSA 116
                   K  + R V +       +E FL           T+D   P   + +    + 
Sbjct: 175 -------GKGGKERLVPMGENAIEWIETFLQQGRSLLLGEQTSDIVFP---SSRGQQMTR 224

Query: 117 NTLCQLFGQIYALAGID--GASSHSGRRWFITQMAHKGVSAKVIMTLAGHRHLSTTQRYI 174
            T          +AGID    S H  R  F T + + G   +V+  L GH  LSTTQ Y 
Sbjct: 225 QTFWHRIKHYAVIAGIDVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYT 284

Query: 175 EVNDHMMK 182
            V    +K
Sbjct: 285 HVATERLK 292