Pairwise Alignments

Query, 931 a.a., DNA polymerase I from Magnetospirillum magneticum AMB-1

Subject, 949 a.a., DNA polymerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  588 bits (1516), Expect = e-172
 Identities = 359/970 (37%), Positives = 530/970 (54%), Gaps = 66/970 (6%)

Query: 6   EAPRHVTLIDGSGFIFRAFHGL--PPMTRADGTPVNAVYGFTTMLMKLLADSSSDHVAVI 63
           E+   + L+D    I+RA++     P   + G   +A+ GF   L ++L   +  H+ V 
Sbjct: 2   ESDNKLFLLDAYALIYRAYYAFIKNPRINSKGFNTSAILGFVNTLEEVLKKENPSHIGVA 61

Query: 64  FDSSRKTFRSAIYPEYKAHRPPAPEELVPQFPLVREATRAFDLPAIELEGFEADDLIATY 123
           FD S  TFR   + +YKA R   PE +    P++++   A+ +P +E+ G+EADD+I T 
Sbjct: 62  FDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEADDVIGTL 121

Query: 124 ARLAVEAGARVTIVSSDKDLMQLVGPGVEMIDPMKN---RTIGEAEVREKFGV-SPDKVV 179
           A  A   G    +++ DKD  QLV   V M  P        +G  EV+ KF + SP +V+
Sbjct: 122 ATEAGRQGITTYMMTPDKDYGQLVTDNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPAQVI 181

Query: 180 DVQALCGDSSDNVPGVPGIGVKTAAQLIEEYGDLDTLLARASEIKQPKRRESLIANADLA 239
           D+  L GD+SDN+PG PG+G KTA +LI E+G ++ LL    ++K   + + +  N +L 
Sbjct: 182 DMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK-VETNKELI 240

Query: 240 RISRELVRLRTDAPVPVPLSELDVKPPAPEKLAAFCAAQGFRSLMGRLNAKIPTAA---- 295
             S+ L  ++ D P+ + + +L  +    + L        FR+L+ R+  K  +A     
Sbjct: 241 TFSKFLATIKIDVPIQLEMDKLVREQADEDSLRQIFEELEFRTLIDRVLKKENSAGGVTM 300

Query: 296 PTATRAVLPTEAPAEAPSLPPK---------------------------VETA---YELV 325
            T ++      AP+  P  P +                           +ET    Y+L+
Sbjct: 301 ATGSKTATAKSAPSPLPLFPEEGGAIQGDLFANFTGNEAGEAKKSNLETLETLNCDYQLI 360

Query: 326 TDLAALENWIALATGGGLVGFDTETTGLDPLRARLVGVSLAVAPGRACYIPVLHAPAQAQ 385
                    I       ++  DTETTG +P+ A LVG+S ++   +A Y+PV   P   +
Sbjct: 361 DTEKKRAEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSITENQAFYVPV---PDNRE 417

Query: 386 GDLLGGPSTDAPQIIPAAETLARLKPLLADPSVLKVGHNIKYDMQVMAMQGLAVE-PFDD 444
                           A + +   +P+  + + LKVG NIKYDM V+   G+ V+    D
Sbjct: 418 ---------------EALKIVNEFRPVFENENSLKVGQNIKYDMIVLENYGVQVKGALFD 462

Query: 445 TMLLSYALDGASHGHGLDELCLLHLGHANIPFSEVCG-SGRNQVTF-DRVPLDKARDYAA 502
           TM+  Y L      HG+D L  ++L +  I   E+ G  G+NQ    D  P D  R YA 
Sbjct: 463 TMIAHYVLQPELR-HGMDYLAEIYLHYQTIHIDELIGPKGKNQKNMRDLDPKDIYR-YAC 520

Query: 503 EDADMTLRLHALLKPRLLSERMVSVYETLERPLVPVIAAMERDGIKVDRAQLMALSEDFG 562
           EDAD+TL+L  +L+  L       ++  +E PLVPV+  +ER+G+ +D   L   S  F 
Sbjct: 521 EDADVTLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFT 580

Query: 563 RRLTELETEVIALNNGEAFNLGSPQQLGKVLFETLNL-PGGKKTKTGQWATGADVLEELA 621
            ++  +E E+  L  GE FN+ SP+Q+G+VLF+ L +    KKTKTGQ+ T  +VLE L 
Sbjct: 581 AQMQRIEQEIYELA-GETFNIASPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLR 639

Query: 622 PLHALPARLLDWRQLSKLKGTYTDALVAQINPATGRVHTSYSLAATTTGRLSSSDPNLQN 681
             H +  ++L+ R L KL GTY DAL   INP TGRVHTS++   T+TGRLSSS+PNLQN
Sbjct: 640 HKHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTVTSTGRLSSSNPNLQN 699

Query: 682 IPIRTEEGRKIRHAFVAEPGKKLVSADYSQIELRLVAHVAEIAGLRDAFAHGADIHAITA 741
           IPIR E G++IR AF+ + G    SADYSQIELR++AH++E   + DAF    DIHA TA
Sbjct: 700 IPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAATA 759

Query: 742 SQVFGVPLDGIDPALRRRAKAINFGIIYGISAFGLAAQLGIPQGEAKAYIEAYFARYPEI 801
           ++++ + L  +D  +RR+AK  NFGIIYGIS FGLA ++ + + EAK  I+ YF  YP +
Sbjct: 760 AKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPSV 819

Query: 802 RAYMERTKEEARDQGFVTTLFGRKVFTPGIKDKNGAMRAFAERAAINGPIQGGAADIIKR 861
           +AYME++ + A+++G+V T+F RK F P I  +N  +R +AER AIN PIQG AADIIK 
Sbjct: 820 KAYMEKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKV 879

Query: 862 AMIRLPAALAAAGLSARLLLQVHDELVLEAPEAEADATVAVVKQVMEAAASLSVPLLVEA 921
           AM R+       G+ A+++LQVHDEL    P  E +    +V + ME A  + VPL  + 
Sbjct: 880 AMARIYQRFQTEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEEMEHAYRMHVPLKADC 939

Query: 922 GIADTWGAAH 931
           G    W  AH
Sbjct: 940 GWGKNWLEAH 949