Pairwise Alignments

Query, 509 a.a., ATP synthase subunit alpha from Magnetospirillum magneticum AMB-1

Subject, 445 a.a., flagellum-specific ATP synthase FliI (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  137 bits (345), Expect = 8e-37
 Identities = 98/355 (27%), Positives = 168/355 (47%), Gaps = 17/355 (4%)

Query: 80  RNIKEGDVVKRTGSIVDVPVGKGLLGRVVDALGNPIDGKGPIEAASRQRVDVKAPGIIPR 139
           R +  G  V   G    + VG  LLGRV+D  G P+DG G +    +      A   + R
Sbjct: 81  RGVLPGARVVPLGEQAGLNVGLSLLGRVLDGNGVPLDGLGALSTEQQAPRHSNAINPLSR 140

Query: 140 KSVHEPMSTGIKAVDALIPIGRGQRELVIGDRQTGKTAILVDTIINQKRWHDANDEKAKL 199
           +++ EP+  G++A++A++ +G+GQR  +      GK+ +L   ++ +    D        
Sbjct: 141 RAITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLL--GMMTRGTTAD-------- 190

Query: 200 FCIYVAVGQKRSTVAQIVKTLTDYGAMDYTIVVAATASEPAPLQFIAPYAGCTMGEYFRD 259
             +   VG++   V + ++ +        ++VVAA A     ++  A      + EYFRD
Sbjct: 191 IIVVGLVGERGREVKEFIEEILGEKGRARSVVVAAPADTSPLMRLRACETSTRIAEYFRD 250

Query: 260 NGMHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMGDAAGAG 319
            G + L++ D L++ A A R+++L +  PP  + YP  VF    RL+ERA   G   G G
Sbjct: 251 LGYNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPRLVERAGNGG--PGQG 308

Query: 320 SLTALPVIETQANDVSAYIPTNVISITDGQIFLETELFYKGIRPAVNVGLSVSRVG---- 375
           S+TA   + T+ +D    I     +I DG I L   L   G  PA+++  S+SRV     
Sbjct: 309 SITAFYTVLTEGDDQQDPIADASRAILDGHIVLSRSLADSGHYPAIDIEASISRVAPMVI 368

Query: 376 SAAQIKAMKQVAGSIKLELAQYREMAAFAQFASDLDPATQKLLARGARLTELLKQ 430
           S   ++AM++V  +  L   Q +++ +   +A   DP     +     +   L+Q
Sbjct: 369 SNEHLEAMRRVKQTYSL-YQQNKDLISIGAYAQGSDPRIDNAIRLQPAMNAFLRQ 422