Pairwise Alignments

Query, 311 a.a., tRNA pseudouridine(55) synthase TruB from Magnetospirillum magneticum AMB-1

Subject, 311 a.a., tRNA pseudouridine synthase B from Sinorhizobium meliloti 1021

 Score =  272 bits (696), Expect = 7e-78
 Identities = 150/311 (48%), Positives = 193/311 (62%), Gaps = 16/311 (5%)

Query: 3   RKRKGDPVNGWLAIDKPLGIGSTQVVAKVKRLLNAAKVGHGGTLDPLASGILPIALGEAT 62
           RK KG P++GWL +DKPL  GST+ V+K+K L  A K GH GTLDPLASG+LPIALG+AT
Sbjct: 5   RKPKGRPISGWLILDKPLDFGSTEAVSKIKWLFKAQKAGHAGTLDPLASGMLPIALGDAT 64

Query: 63  KTVQYVMDGSKTYRFQVRWGEATASCDRESEVIETSPHRPTAEAIAAALPAFLGEIDQIP 122
           KTV YVMDG K Y F V WGE  ++ D E E + +S  RP  EAI A LP + G I Q+P
Sbjct: 65  KTVPYVMDGRKIYEFTVAWGEERSTDDLEGEAVRSSAARPEEEAIRALLPKYTGVIAQVP 124

Query: 123 PAYSAIKIDGQRAYDLARAGEEVEIKPRRVAIKSFTLLGQ-PDADHADFEVHCGKGTYVR 181
           P +SAIKI G+RAYDLAR GE VEI  R V +   +L+G  P+  H  FE+ CGKGTYVR
Sbjct: 125 PQFSAIKIGGERAYDLARDGETVEIPAREVEVFRLSLIGSAPNLAH--FEIECGKGTYVR 182

Query: 182 SLARDLSLALGTVGHVSVLRRIACGPFNEQNAISLESL-------EDLSQVPAPWTFLLP 234
           SLARD+   LG  GH++ LRR    PF E++ + L  L       +D  ++ A   +L+ 
Sbjct: 183 SLARDMGRDLGCFGHIASLRRTFVAPFGEEDMVPLADLVALEAIEDDAERLAALDAYLID 242

Query: 235 IETALDDIPALALTESEARRLQSGNPVSISHVVSRHPQAELAEGTVCRAMQAERLVALVR 294
              AL D+P +A+ + +A RL+ GNP+ +    +  P  E        A    +LVA+  
Sbjct: 243 TGEALSDLPHIAVNDDQAHRLRMGNPIILRGRDAPLPTPE------AYATAQGKLVAIGE 296

Query: 295 IESGEIRPVRV 305
           I  GE RP RV
Sbjct: 297 IAEGEFRPKRV 307