Pairwise Alignments

Query, 311 a.a., tRNA pseudouridine(55) synthase TruB from Magnetospirillum magneticum AMB-1

Subject, 308 a.a., tRNA pseudouridine synthase B (NCBI) from Rhodospirillum rubrum S1H

 Score =  354 bits (909), Expect = e-102
 Identities = 180/308 (58%), Positives = 227/308 (73%)

Query: 1   MARKRKGDPVNGWLAIDKPLGIGSTQVVAKVKRLLNAAKVGHGGTLDPLASGILPIALGE 60
           M+R+R+G  ++GWLAIDKP+GI ST VV +++R ++AAKVGHGGTLDPLASG+LPIA GE
Sbjct: 1   MSRRRRGQAIHGWLAIDKPVGITSTDVVNRLRRTMDAAKVGHGGTLDPLASGVLPIAFGE 60

Query: 61  ATKTVQYVMDGSKTYRFQVRWGEATASCDRESEVIETSPHRPTAEAIAAALPAFLGEIDQ 120
           ATKTV YVMDG+K Y   V WGEA  + DRE +VI+TS  RP A+AI A L  F GEI+Q
Sbjct: 61  ATKTVSYVMDGTKVYHMVVGWGEARDTDDREGKVIDTSDVRPDAQAITAMLARFTGEIEQ 120

Query: 121 IPPAYSAIKIDGQRAYDLARAGEEVEIKPRRVAIKSFTLLGQPDADHADFEVHCGKGTYV 180
           +PP YSA+K++G+R+YDLARA + VE+K R++ IK  TLL     D   F +  GKG Y+
Sbjct: 121 VPPIYSAVKVEGRRSYDLARADQAVELKSRKILIKDLTLLETSTPDFGHFRIVSGKGAYM 180

Query: 181 RSLARDLSLALGTVGHVSVLRRIACGPFNEQNAISLESLEDLSQVPAPWTFLLPIETALD 240
           RSLARDL+LALGTVGHV  LRR+ACGPF  + AISL+ ++ L         LLPIE AL 
Sbjct: 181 RSLARDLALALGTVGHVVALRRLACGPFTAETAISLDMVDALGHDAPHSESLLPIEAALA 240

Query: 241 DIPALALTESEARRLQSGNPVSISHVVSRHPQAELAEGTVCRAMQAERLVALVRIESGEI 300
           DIPA+ LTE+EARRL  G PVS+ H+ SR P   LA+G   +A+   +LVAL +I  GEI
Sbjct: 241 DIPAVPLTEAEARRLSQGQPVSLLHLASRTPLNGLAQGETVQALLNGKLVALAKIVEGEI 300

Query: 301 RPVRVMNL 308
           RP+RV+NL
Sbjct: 301 RPLRVVNL 308