Pairwise Alignments

Query, 308 a.a., site-specific tyrosine recombinase XerD from Magnetospirillum magneticum AMB-1

Subject, 298 a.a., tyrosine recombinase XerD from Pseudomonas stutzeri RCH2

 Score =  194 bits (492), Expect = 3e-54
 Identities = 124/294 (42%), Positives = 169/294 (57%), Gaps = 3/294 (1%)

Query: 6   DRHIESFLEMMQVERGASPNTLDAYGRDLADFAEFLDGRGFSPLRADARAVAAYIARQAE 65
           D  I+ +L+ + +E+G + N+ +AY  DLA F  +L  RG     A    +  ++A +  
Sbjct: 6   DSVIDRYLDALWLEKGLADNSREAYRSDLALFNGWLSERGVRLAVAGREIILDHLAWRLN 65

Query: 66  IGMAARTQARRLSCLKQFYGFVFAERLRPDDPTANIDAPRLGRPLPKYLRREEVTALLDA 125
            G  AR+ AR LS L+ FY ++  E     DPT  +D PRLGRPLPK L   +V ALL A
Sbjct: 66  NGYKARSTARFLSGLRGFYRYLLREGEIAVDPTLRVDLPRLGRPLPKALSEADVEALL-A 124

Query: 126 ARALEGSDGILMTALLETLYAAGLRVSELVSLPLSAVARDPSVLVVRGKGSKERMVPLSD 185
           A  L    G+   A+LE LYA GLRV+EL+SL L  V+    VL   GKG+KER+VPL D
Sbjct: 125 APDLGDPIGLRDRAMLEVLYACGLRVTELISLTLEQVSMRQGVLRTFGKGNKERLVPLGD 184

Query: 186 PARAALLAWKVERQTLVPKSKPSRWLFPSSGALGHLTRSGFAKMLGRVAVLAGLDPAKVS 245
            A   L  ++ E +  +   K    LFPS      +TR  F   +   A +AG+    +S
Sbjct: 185 EALHWLERYQREGRDELLGGKARDVLFPSLRG-DQMTRQTFWHRIKLHAKVAGI-ATSIS 242

Query: 246 PHVLRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHLIDDEAGRLVRAHHP 299
           PH LRH+FA+HLL  GADLR+VQ +LGH+D++TT+IYTH+       L   HHP
Sbjct: 243 PHTLRHAFATHLLNHGADLRTVQMLLGHSDLSTTQIYTHIARARLQELHAQHHP 296