Pairwise Alignments

Query, 308 a.a., site-specific tyrosine recombinase XerD from Magnetospirillum magneticum AMB-1

Subject, 300 a.a., integrase/recombinase XerD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  170 bits (430), Expect = 4e-47
 Identities = 109/294 (37%), Positives = 161/294 (54%), Gaps = 3/294 (1%)

Query: 6   DRHIESFLEMMQVERGASPNTLDAYGRDLADFAEFLDGRGFSPLRADARAVAAYIARQAE 65
           D  I++FL+ +   +G S NTL AY  DL  F  +L  +G          V AY+A + E
Sbjct: 8   DPLIDAFLDDLWSSKGLSDNTLSAYRTDLRHFDRYLQSQGLRLRDVGQADVRAYLAYRVE 67

Query: 66  IGMAARTQARRLSCLKQFYGFVFAERLRPDDPTANIDAPRLGRPLPKYLRREEVTALLDA 125
              A  + AR LS L++FY ++   +    DP A I++P+L R LP  L   +V  LL A
Sbjct: 68  QQFARTSSARLLSSLRRFYNYLLQTKQISGDPMAQIESPKLSRHLPDSLSESQVDRLL-A 126

Query: 126 ARALEGSDGILMTALLETLYAAGLRVSELVSLPLSAVARDPSVLVVRGKGSKERMVPLSD 185
              ++        A+LE LYA GLRVSELV L +  ++    ++ + GKG KER+VP+ +
Sbjct: 127 EPNVDDPVECRDKAMLELLYATGLRVSELVGLTMEQMSLRQGLVRIIGKGGKERLVPMGE 186

Query: 186 PARAALLAWKVERQTLVPKSKPSRWLFPSSGALGHLTRSGFAKMLGRVAVLAGLDPAKVS 245
            A   +  +    +  +     S  +FPS  +   +TR  F   +   A  AG++  ++S
Sbjct: 187 MAITEVEHYLTSARHELLGHIQSDVVFPSKRS-QMMTRQTFWHRIKLYASRAGIE-TELS 244

Query: 246 PHVLRHSFASHLLAGGADLRSVQEMLGHADIATTEIYTHLIDDEAGRLVRAHHP 299
           PH LRH+FA+HLL  GADLR VQ +LGH+D++TT+IYTH+       L + HHP
Sbjct: 245 PHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQHHP 298