Pairwise Alignments

Query, 379 a.a., succinyl-diaminopimelate desuccinylase from Magnetospirillum magneticum AMB-1

Subject, 377 a.a., succinyl-diaminopimelate desuccinylase (RefSeq) from Shewanella loihica PV-4

 Score =  223 bits (568), Expect = 7e-63
 Identities = 139/372 (37%), Positives = 199/372 (53%), Gaps = 14/372 (3%)

Query: 13  LIRCPSVTPEDAGALDVLAGALEELGFACHHIRSATGGPEIRNLYARLGTEAPNLCFAGH 72
           L+R PS+TPEDAG    L   L  +GF   H +       + NL A        L  AGH
Sbjct: 7   LMRRPSITPEDAGCQQWLGERLVAMGFDVSHYQDKG----VSNLLASFDERPAQLALAGH 62

Query: 73  TDVVPPG--KGWTVEPFAAGIDQGRLFGRGSADMKGAIACFVAAVA-RLLEDGAPKGSLS 129
           TDVVPPG    W   PFAA +  G L GRG+ DMK  +A  +AAV   +   G PK +  
Sbjct: 63  TDVVPPGDLSRWQTPPFAATLVDGMLIGRGAVDMKSGLAVMLAAVEDHIACYGLPKANWQ 122

Query: 130 LLITGDEEGPAVDGTVKVLDWLAARGERIDCCIVGEPTNPRKLGDMMKIGRRGSLNCRLT 189
            ++T DEEG A  GT  +++ L A+      C+V EPT  ++ GD++KIGRRG+++ RLT
Sbjct: 123 FIVTSDEEGEAEHGTRTLVERLKAQSRLPKYCVVAEPTADKQAGDVIKIGRRGAISARLT 182

Query: 190 VFGTQGHSAYPHLADNPIPRLLDILRRLTEAPLDEGTPHFQASTLALTTVDVGNPATNVI 249
           + G QGH AYP  A N +     +++ L     DEG+  F  ++L +T VD G    N++
Sbjct: 183 LKGKQGHVAYPKNAVNALHMAARVMQALEALIWDEGSDDFPGTSLQVTHVDSGAFTDNIV 242

Query: 250 PAEARAGFNIRFNDLHSGASLERWIR---DTVAQAGGEVEIKVEVSGESFLTPPGALSDA 306
           P      FNIR++  +S A +   I+   D ++     + ++ E   + + T        
Sbjct: 243 PGSCEICFNIRYSYRYSEAGIMARIQACLDGLSLGEDAISLRWERGCQPYHTQENDEQSL 302

Query: 307 LAE---AAFEVTGLRPELSTSGGTSDARFIKN-HCPVVEFGLVGQTMHKSDEHVSVADME 362
           +A+   A FEVT   P LSTSGGTSD RF+ +    V+E GL  +T+H+ +E V +A + 
Sbjct: 303 IAQVEAAIFEVTASFPRLSTSGGTSDGRFLSSPQTQVIELGLPNRTIHQVNERVELAQIV 362

Query: 363 ALTEIYRRVLVR 374
            L  IYR +L R
Sbjct: 363 RLYRIYRALLTR 374