Pairwise Alignments

Query, 702 a.a., excinuclease ABC subunit UvrB from Magnetospirillum magneticum AMB-1

Subject, 680 a.a., excinuclease ABC subunit B (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  775 bits (2002), Expect = 0.0
 Identities = 392/670 (58%), Positives = 489/670 (72%), Gaps = 12/670 (1%)

Query: 22  FKIVSDYQPAGDQPQAIAELSAGVDADERDQVLLGVTGSGKTFTMAHVIARTRRPALVLA 81
           F + +DY+P GDQP+AI ++ + ++A   DQVLLGVTGSGKTFTMA VIAR  RPALVLA
Sbjct: 6   FILRTDYEPRGDQPEAIGQIVSNIEAGVTDQVLLGVTGSGKTFTMAQVIARCGRPALVLA 65

Query: 82  PNKTLAAQLYAEMKGFFPDNAVEYFVSYYDYYQPEAYIPRTDTYIEKDSAVNEQIDRMRH 141
           PNKTLAAQLY E +  FP+NAVEYFVSYYDYYQPEAY+P +DTYIEKDS++N+ ID++RH
Sbjct: 66  PNKTLAAQLYNEFRQLFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDNIDKLRH 125

Query: 142 AATRALLERRDVILVASVSCIYGIGSVESYARMTVALKVGESIDRSDLLKRLVELQYTRN 201
           AAT ALL RRDV++VASVSCIYG+GS E YA++ + ++ G+ +    L+ RLVE+QY RN
Sbjct: 126 AATHALLTRRDVVIVASVSCIYGLGSPEYYAKLVIPVETGQRLSMDALITRLVEVQYERN 185

Query: 202 DAAFERGTFRVRGDAVEIFPVHYEDRAWRLSLFGDEIEAINEFDPLTGEKTCSLSEVTVY 261
           D  F RGTFRVRGD +EI P ++ +RA R+  FGD+I+AI+E DPLTG+   S+ +  +Y
Sbjct: 186 DYDFHRGTFRVRGDVLEIIPAYHHERALRIEFFGDDIDAISEIDPLTGQVLASVGKTVIY 245

Query: 262 PSSHYVTPRPTITQAIKGIKAELKETLERFHAEGKLLEAQRLEQRTNFDLEMLETTGHCK 321
           P+SHYV+ R  + +AI  I+ EL E L       +L+EAQRLEQRT  DLEM+E  G+C 
Sbjct: 246 PASHYVSDRDNLVRAISDIRDELGERLRELKGGNRLVEAQRLEQRTMLDLEMMEEMGYCN 305

Query: 322 SIENYSRYLTGRRPGDPPPTLFEYLPEDALLIVDESHVTVPQIGGMYRGDFNRKSVLAEF 381
            +ENYSR+L GR+ GDPP  L +Y P+D LL VDESH+TV Q+G MY+GD +RKS L ++
Sbjct: 306 GVENYSRHLDGRKAGDPPSCLLDYFPDDFLLFVDESHITVSQVGAMYKGDRSRKSTLVDY 365

Query: 382 GFRLPSCIDNRPLKFEEWELMRPQTVYVSATPGPWEMERTGGVFTEQVIRPTGLIDPVCI 441
           GFRLPS +DNRPL+F E+     Q +YVSATPG WE++R+ G+  EQ+IRPTGL+DP+  
Sbjct: 366 GFRLPSALDNRPLEFHEFLARLNQAIYVSATPGKWELDRSQGIVAEQIIRPTGLVDPITE 425

Query: 442 VRPVEHQVDDLLGEVRQMARLGNRTLVTTLTKRMAEDLTEYMHDNGVRVRYLHSDIDTLE 501
           VRP + QVDDLLGE R  A    R LVTTLTKRMAEDLTEY ++ GV  RYLHSDIDT+E
Sbjct: 426 VRPTKGQVDDLLGECRLRAARDERVLVTTLTKRMAEDLTEYFNEMGVAARYLHSDIDTME 485

Query: 502 RIEIIRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSKTSLIQTIGRAAR 561
           R+ II+ LR   FDVL+GINLLREGLDIPE +LV+ILDADKEGFLRS  SLIQT GRAAR
Sbjct: 486 RMAIIQALRRKEFDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSAGSLIQTFGRAAR 545

Query: 562 NIDGRVILYADKMTASLDYALAETNRRREKQQAYNALHGITPEGIRKAVSDVMDSVY-EA 620
           N++GRV++YAD +T S+  A+ ET RRRE+Q  YN  H I P  IRKAV    D++Y EA
Sbjct: 546 NVEGRVLMYADVVTRSMQAAMDETARRRERQTGYNEAHHIVPATIRKAVETPFDAIYAEA 605

Query: 621 DYV--TVGTGDSGLAHGV---------GHNLASVKADIEKRMKAAAADLEFEEAARLRDE 669
                  G G  G A             H LA     +E+ M+ AA +LEFE AA LRD 
Sbjct: 606 AEAKGRKGKGRKGAAQAAETFAPWSSDPHELAKQIQQLERDMREAAKELEFERAAELRDR 665

Query: 670 LRRLEALDLG 679
           +R L    LG
Sbjct: 666 IRLLREHLLG 675