Pairwise Alignments

Query, 702 a.a., excinuclease ABC subunit UvrB from Magnetospirillum magneticum AMB-1

Subject, 673 a.a., excinuclease ABC, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  790 bits (2039), Expect = 0.0
 Identities = 395/665 (59%), Positives = 508/665 (76%), Gaps = 11/665 (1%)

Query: 22  FKIVSDYQPAGDQPQAIAELSAGVDADERDQVLLGVTGSGKTFTMAHVIARTRRPALVLA 81
           F++ S + PAGDQP AIA+L  G+++    Q LLGVTGSGKTFT+A+VIA+  RP +++A
Sbjct: 6   FQLESQFAPAGDQPTAIAKLVDGLESGLACQTLLGVTGSGKTFTIANVIAKLGRPTIIMA 65

Query: 82  PNKTLAAQLYAEMKGFFPDNAVEYFVSYYDYYQPEAYIPRTDTYIEKDSAVNEQIDRMRH 141
           PNKTLAAQLY EMK FFP+NAVEYFVSYYDYYQPEAY+P ++T+IEKD++VN  I++MR 
Sbjct: 66  PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQMRL 125

Query: 142 AATRALLERRDVILVASVSCIYGIGSVESYARMTVALKVGESIDRSDLLKRLVELQYTRN 201
           +AT+ALLER+DV+L+ASVS IYG+G  +SY +M + L+ G+++ + D+LKRL ELQYTRN
Sbjct: 126 SATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDTMGQRDILKRLSELQYTRN 185

Query: 202 DAAFERGTFRVRGDAVEIFPVHYEDRAWRLSLFGDEIEAINEFDPLTGEKTCSLSEVTVY 261
           D   +RGTFRVRG+ ++IFP   +  A R+ LF DEIE ++EFDPLTG+    ++  TVY
Sbjct: 186 DIELQRGTFRVRGEVIDIFPADSDRYAIRVELFDDEIERLSEFDPLTGQIVKRIARTTVY 245

Query: 262 PSSHYVTPRPTITQAIKGIKAELKETLERFHAEGKLLEAQRLEQRTNFDLEMLETTGHCK 321
           P +HYVTPR  I +A + IK EL+E  +      KL+EAQR+ +R  +D+EM+   G+C 
Sbjct: 246 PKTHYVTPREKILEATELIKQELRERKQYLLDNNKLIEAQRIHERVQYDIEMMVELGYCS 305

Query: 322 SIENYSRYLTGRRPGDPPPTLFEYLPEDALLIVDESHVTVPQIGGMYRGDFNRKSVLAEF 381
            IENYSRYL+GR PG+ PPTL +YLP D LL++DESHVTVPQIG MY+GD +RK+ L E+
Sbjct: 306 GIENYSRYLSGRAPGEGPPTLLDYLPADGLLVIDESHVTVPQIGAMYKGDRSRKTTLVEY 365

Query: 382 GFRLPSCIDNRPLKFEEWELMRPQTVYVSATPGPWEMERTGGVFTEQVIRPTGLIDPVCI 441
           GFRLPS +DNRPLKFEE+E + PQT+YVSATP  +E+E++GG   EQV+RPTGL+DP   
Sbjct: 366 GFRLPSALDNRPLKFEEFEQLMPQTIYVSATPNSYELEKSGGEIVEQVVRPTGLLDPELE 425

Query: 442 VRPVEHQVDDLLGEVRQMARLGNRTLVTTLTKRMAEDLTEYMHDNGVRVRYLHSDIDTLE 501
           VRPV  QVDDLL EV +   +  R LVTTLTKRM+EDLTEY+ ++GV+VRYLHSDIDT+E
Sbjct: 426 VRPVGIQVDDLLSEVAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSDIDTVE 485

Query: 502 RIEIIRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSKTSLIQTIGRAAR 561
           R+EIIRDLRLG FDVL+GINLLREGLD+PE +LV ILDADKEGFLRS+ SLIQTIGRAAR
Sbjct: 486 RVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGRAAR 545

Query: 562 NIDGRVILYADKMTASLDYALAETNRRREKQQAYNALHGITPEGIRKAVSDVMDSVYEAD 621
           N++G+VILYAD++T S+  A+ ET RRREKQ+ YN  HGI P+G+ K ++DVMD V +  
Sbjct: 546 NVNGKVILYADRITNSMAKAIGETERRREKQRLYNLEHGIVPKGVVKRITDVMD-VDDGR 604

Query: 622 YVTVGTGDSGLA----------HGVGHNLASVKADIEKRMKAAAADLEFEEAARLRDELR 671
               G G + L           H     L+     +EK+M   A +LEFE+AA LRDE++
Sbjct: 605 EAEKGHGQASLGRVAEPKAKRYHADAAQLSHDIDKLEKQMHEHARNLEFEQAAALRDEVK 664

Query: 672 RLEAL 676
           RL  L
Sbjct: 665 RLREL 669