Pairwise Alignments

Query, 702 a.a., excinuclease ABC subunit UvrB from Magnetospirillum magneticum AMB-1

Subject, 677 a.a., excinuclease ABC, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  771 bits (1992), Expect = 0.0
 Identities = 390/672 (58%), Positives = 488/672 (72%), Gaps = 21/672 (3%)

Query: 19  DVEFKIVSDYQPAGDQPQAIAELSAGVDADERDQVLLGVTGSGKTFTMAHVIARTRRPAL 78
           D  F++ ++++P GDQP+AI ++ A +    RDQVLLGVTGSGKTFT+A+VIA   RPAL
Sbjct: 3   DTCFRLHTEFEPTGDQPEAIGQIVANLGHGVRDQVLLGVTGSGKTFTVANVIAACNRPAL 62

Query: 79  VLAPNKTLAAQLYAEMKGFFPDNAVEYFVSYYDYYQPEAYIPRTDTYIEKDSAVNEQIDR 138
           +LAPNKTLAAQLY E +  FPDNAVEYFVSYYDYYQPEAY+P +DTYIEKDS++N+ ID+
Sbjct: 63  ILAPNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDK 122

Query: 139 MRHAATRALLERRDVILVASVSCIYGIGSVESYARMTVALKVGESIDRSDLLKRLVELQY 198
           +RHAAT ALL RRDV++VASVSCIYG+GS E YAR+ + ++ G+      L+ RLVE+QY
Sbjct: 123 LRHAATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEVQY 182

Query: 199 TRNDAAFERGTFRVRGDAVEIFPVHYEDRAWRLSLFGDEIEAINEFDPLTGEKTCSLSEV 258
            RND  F RGTFRVRGD +E+ P ++ +RA R+  FGD+I+AI+E DPLTGE   S+ + 
Sbjct: 183 QRNDFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVGKT 242

Query: 259 TVYPSSHYVTPRPTITQAIKGIKAELKETLERFHAEGKLLEAQRLEQRTNFDLEMLETTG 318
            +YP+SHYV+ R  + +A+  I+ EL E L  + +  +L+EAQRLEQRT  DLEM+E  G
Sbjct: 243 VIYPASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEELG 302

Query: 319 HCKSIENYSRYLTGRRPGDPPPTLFEYLPEDALLIVDESHVTVPQIGGMYRGDFNRKSVL 378
           +C  IENYSR+L GR  G PP  L +Y P+D LL VDESH+TVPQ+G MY+GD +RKS L
Sbjct: 303 YCNGIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKSTL 362

Query: 379 AEFGFRLPSCIDNRPLKFEEWELMRPQTVYVSATPGPWEMERTGGVFTEQVIRPTGLIDP 438
            +FGFRLPS +DNRPL+F E+     QTVYVSATPG WE++R+ GV  EQ+IRPTGL+DP
Sbjct: 363 VDFGFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLVDP 422

Query: 439 VCIVRPVEHQVDDLLGEVRQMARLGNRTLVTTLTKRMAEDLTEYMHDNGVRVRYLHSDID 498
           V  VRP   QVDDLL E R  A    R L+TTLTKRMAEDLTE++ + G+ VRYLHSDID
Sbjct: 423 VVEVRPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSDID 482

Query: 499 TLERIEIIRDLRLGAFDVLIGINLLREGLDIPECALVAILDADKEGFLRSKTSLIQTIGR 558
           T+ER+ II+ LR G  DVL+GINLLREGLDIPE +LV+ILDADKEGFLRS  SLIQT GR
Sbjct: 483 TMERMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGR 542

Query: 559 AARNIDGRVILYADKMTASLDYALAETNRRREKQQAYNALHGITPEGIRKAVSDVMDSVY 618
           AARN  GRVILYAD +TAS+  A+ ET RRRE+QQA+N  +GI P  IRK++    D++Y
Sbjct: 543 AARNAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDAIY 602

Query: 619 EADYVTVGTGDSGLAHGVGHNLASVKADI-----------------EKRMKAAAADLEFE 661
            A       G  G   G G   A    ++                 E+ M+ AA +LEFE
Sbjct: 603 SA----ASEGGKGKGRGRGRQAAPAVENVAEYGTSPEDMAKHIQKLEREMREAAKELEFE 658

Query: 662 EAARLRDELRRL 673
            AA LRD +R L
Sbjct: 659 RAATLRDRIRLL 670