Pairwise Alignments

Query, 597 a.a., single-stranded-DNA-specific exonuclease RecJ from Magnetospirillum magneticum AMB-1

Subject, 613 a.a., single-stranded-DNA-specific exonuclease RecJ from Rhodopseudomonas palustris CGA009

 Score =  503 bits (1296), Expect = e-147
 Identities = 282/595 (47%), Positives = 376/595 (63%), Gaps = 17/595 (2%)

Query: 12  PAFLGVERSLSGRRWLARPGDERL---AQALAQRLALPELVGRVLASRGIGLDEAESFLN 68
           PAFLGV RS +G+ W  R  D R    AQA+ QR  LPE++ RVLA RG+ +D+ E FL 
Sbjct: 14  PAFLGVTRSATGKAWRDRL-DARATAKAQAMVQRYQLPEMLARVLAGRGVEIDQVEDFLE 72

Query: 69  PTLRDLLPDPGHLKGMDKAVERLVAAVTRGETIGIFGDYDVDGATSSALLRNALADMGAK 128
           PT+R L+PDP  L  M+   +R+  A +RGE + IFGDYDVDGATSSALL   L   G  
Sbjct: 73  PTIRKLMPDPASLTQMEAGAKRIADAASRGEKVAIFGDYDVDGATSSALLAWHLRHCGLD 132

Query: 129 ARVYIPDRIKEGYGPNAPALLRLRDEGVAVVVTVDCGTTAFDALETATRAGLDMIVVDHH 188
             ++IPDRI EGYGPN  A+  L  +G  +++TVDCGTT+ + L  A R G+ ++V+DHH
Sbjct: 133 PLIHIPDRIFEGYGPNIDAIRMLAGKGATLLITVDCGTTSLEPLAEARRLGMSVVVIDHH 192

Query: 189 VGEAALPAALAVINPNRLDETSPHGHLAAVGVAFLLAVGLNRGLKAAG-WYQSRPAPDLM 247
                LP   A+INPNR D+ S  GHLAAVG+  +  V +NR L+  G W   RP P+L+
Sbjct: 193 QCGDELPDVDALINPNRPDDLSGLGHLAAVGLVLMTLVAVNRELRHRGFWTTERPEPNLL 252

Query: 248 RWLDLVALGTVCDVVPLVGVNRALVVQGLKVMAKRANVGLAALADVAGVKERPDSYTLGY 307
             L  VALGTV DV PLVG+NRA V +GL  M +R +VG  AL DV+ +   P+++ LG+
Sbjct: 253 DMLHHVALGTVADVAPLVGLNRAFVAKGLIAMRRRDHVGHTALMDVSRLNGPPEAWHLGF 312

Query: 308 VLGPRVNAGGRVGEAELGTRLMSTDNPAEAAEIARQLDGYNKDRQEIE--AVVLLDAIEQ 365
           +LGPR+NAGGR+G A+LG RL+   + +EAA IA +LD  N +R+EIE  A    +A   
Sbjct: 313 MLGPRINAGGRIGRADLGVRLLLESDVSEAARIAAELDRLNSERREIEQKAEAQAEAEAM 372

Query: 366 VETRPDDGRPLLVAAGENWHPGVIGIVAGRLKERYGRVACVVALE-GDQGKGSGRSVPGL 424
                +D   ++V A E WHPGV+G+VA RLKE++GR +  +ALE G  G GSGRS+ G+
Sbjct: 373 ASLGLEDKGAVIVTASEGWHPGVVGLVASRLKEKFGRPSFAIALEPGGIGTGSGRSISGV 432

Query: 425 DLGSAIIAARQAGLLRAGGGHAMAAGFTVARDKLTALSDFLAERLQAQLEGDL-----VP 479
           DLG A+  A   GLL  GGGHAMAAG T+ +++   L++F A  L+  L GD+     V 
Sbjct: 433 DLGKAVRQAVHDGLLLKGGGHAMAAGVTLRKER---LAEFRA-WLETTLAGDVAKSRHVN 488

Query: 480 LLELDGALDAGAAGIELVETLAGVGPFGSGNPEPRFAISGARIAKADVVGSGHVRLILTG 539
            L +DGA+ A     +L  TL   GPFG+GNPEP  A+   ++  AD VG  H+RL    
Sbjct: 489 ELYIDGAVSARGVTTDLAATLNRAGPFGAGNPEPIVALPAHQLIYADEVGQAHLRLRFKA 548

Query: 540 AGGKRLKAIAFRAADSEMGHALLSSAGASFHLAGTLRVDTWQGNSSVQLIVDDAA 594
             G  +  IAFR+   ++G+AL  + G + H+AG+L VD WQG   VQL V D A
Sbjct: 549 GDGAIVNGIAFRSVGQKLGNALTENRGQTLHVAGSLSVDRWQGAERVQLRVIDVA 603