Pairwise Alignments

Query, 597 a.a., single-stranded-DNA-specific exonuclease RecJ from Magnetospirillum magneticum AMB-1

Subject, 606 a.a., single-stranded-DNA-specific exonuclease recJ from Caulobacter crescentus NA1000

 Score =  517 bits (1331), Expect = e-151
 Identities = 277/588 (47%), Positives = 374/588 (63%), Gaps = 10/588 (1%)

Query: 13  AFLGVERSLSGRRWLARPGDERLAQALAQRLALPELVGRVLASRGIGLDEAESFLNPTLR 72
           AFLGVERSLSGR W  RP D  + + + QR  L E + + L SRG+ L+ AE +L PTL+
Sbjct: 13  AFLGVERSLSGRAWRERPADLAVVREIQQRHGLIEPLAKALVSRGVTLEHAEHYLRPTLK 72

Query: 73  DLLPDPGHLKGMDKAVERLVAAVTRGETIGIFGDYDVDGATSSALLRNALADMGAKARVY 132
            L PDP     MD+A E L+ A+ RG    +F DYDVDGATS+A L      MG +  +Y
Sbjct: 73  ALFPDPSLFTDMDRAAEILIDALERGRPTMVFADYDVDGATSAAQLVRWFRHMGVELPIY 132

Query: 133 IPDRIKEGYGPNAPALLRLRDEGVAVVVTVDCGTTAFDALETATRAGLDMIVVDHHVGEA 192
           IPDR+ EGYGP+  A  ++RD G  +VVT+DCG  A+DA+ +A   GL+++V+DHH+   
Sbjct: 133 IPDRLTEGYGPSPAAFRKIRDGGAELVVTLDCGAAAYDAIASAGEIGLEVVVIDHHLMRE 192

Query: 193 ALPAALAVINPNRLDETSPHGHLAAVGVAFLLAVGLNRGLKAAGWY-QSRPAPDLMRWLD 251
             PAA AV+NPNR    S  G LAA GV F+L   LNR  +  G + + RP PD  +WLD
Sbjct: 193 DPPAAAAVVNPNRPGCPSGQGVLAAAGVTFVLLTALNREARKRGLFTEDRPQPDPRQWLD 252

Query: 252 LVALGTVCDVVPLVGVNRALVVQGLKVMAKRANVGLAALADVAGVKERPDSYTLGYVLGP 311
           LVALG VCDV  LVG NRAL   GL+ M   AN GL AL +V      P  +T G++LGP
Sbjct: 253 LVALGEVCDVTQLVGFNRALTALGLRAMGAWANPGLKALFEVGKGSGEPSVFTAGFILGP 312

Query: 312 RVNAGGRVGEAELGTRLMSTDNPAEAAEIARQLDGYNKDRQEIEAVVLLDAIEQVET--- 368
           R+NAGGRVG ++LG RL+STD+P EA  +A +LD  N +R+ +EA V+ +A   +E    
Sbjct: 313 RINAGGRVGRSDLGARLLSTDDPLEARALAEELDSLNTERKAVEAAVVEEAAAMLERGSN 372

Query: 369 -RPDDGRPLLVAAGENWHPGVIGIVAGRLKERYGRVACVVALE--GDQGKGSGRSVPGLD 425
             PD   P++V AG++WHPGVIGIVAGRL+ERY +   V+ ++   + GKGSGRS  G++
Sbjct: 373 FNPD--APVIVVAGDDWHPGVIGIVAGRLRERYRKPVVVIGIDRAANVGKGSGRSQSGVN 430

Query: 426 LGSAIIAARQAGLLRAGGGHAMAAGFTVARDKLTALSDFLAERLQAQLEGDLVPLLELDG 485
           LG AI AA +AGLL AGGGHAMAAG ++  + +     FL ERL  ++E   V  +E+D 
Sbjct: 431 LGRAIQAAFEAGLLMAGGGHAMAAGLSIRPEMIPEFRAFLEERLAGEMEAVGVEAVEVDA 490

Query: 486 ALDAGAAGIELVETLAGVGPFGSGNPEPRFAISGARIAKADVVGSGHVRLILTGAGGKRL 545
            +   AA   L++    + PFG GNPEP FA+S  R  +   +  GHVR+ L G  G R+
Sbjct: 491 LVQPRAANRALLDDFQRLAPFGPGNPEPLFALSQVRPERVSALKGGHVRMDLVGPTGDRI 550

Query: 546 KAIAFRAADSEMGHALLSSAGASFHLAGTLRVDTWQGNSSVQLIVDDA 593
           KAI++R+A++ +G  LL + G    + G L+ D + G + VQL ++DA
Sbjct: 551 KAISWRSAETPLGQRLL-AGGGPLDVVGKLKPDDYMGRNGVQLEIEDA 597