Pairwise Alignments

Query, 189 a.a., site-specific integrase from Magnetospirillum magneticum AMB-1

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score = 45.8 bits (107), Expect = 7e-10
 Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 17/186 (9%)

Query: 5   KVLSEAEMKRVLAVVAQHGILSTRNRLAVLLSHWAGMRAGEIAALKIMDVVNEGGAVRDR 64
           K LSEA+++ +L+       L  R++  + L +  G+R  E+ +L + ++    G VR  
Sbjct: 115 KDLSEAQVEALLSAPDPQSPLELRDKAMLELLYATGLRVTELVSLTMENMSLRQGVVR-- 172

Query: 65  VHLAATQTKGKRGRTVFINTKLQREIARYLEQR------EWTDERKPLIRSQKGGHFSPT 118
                   KG + R V +       I  +L+Q       E T +   +  S +G   +  
Sbjct: 173 -----VMGKGGKERLVPMGENAIEWIETFLQQGRSLLLGEQTSDI--VFPSSRGQQMTRQ 225

Query: 119 TMVMLFRRIYDEAGLSDAR--SHSGRRSYLTTLANKGVSVFVLQQLAGHQSIQTTQRYVT 176
           T     +     AG+   +   H  R ++ T L N G  + V+Q L GH  + TTQ Y  
Sbjct: 226 TFWHRIKHYAVIAGIDVEKLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTH 285

Query: 177 VNEEMM 182
           V  E +
Sbjct: 286 VATERL 291