Pairwise Alignments

Query, 288 a.a., DNA-directed RNA polymerase specialized sigma subunit from Magnetospirillum magneticum AMB-1

Subject, 192 a.a., hypothetical protein from Azospirillum brasilense Sp245

 Score = 54.3 bits (129), Expect = 2e-12
 Identities = 55/167 (32%), Positives = 78/167 (46%), Gaps = 15/167 (8%)

Query: 8   ALVHFLAQRPRLRLLAYRLLGSTADAEDVLQDAWLK-WSRGSDGVEEPAAFLTTQVTRLA 66
           ALVH      R   LA R+ GS A+AED+ QDA+L+ W R     +E A F TT + R+ 
Sbjct: 26  ALVH--RHLKRAYALARRMSGSDAEAEDIAQDAFLQVWQRRDHWTDEGAKF-TTWLYRVV 82

Query: 67  LDRLRKDQRR-ARLGAQWLPDPWVEPLEPGEA-------DLSTGLLLLLERLTPDQRAVY 118
           L+R    +RR A      +P+P   P    +A        ++  L    +RL   QRA  
Sbjct: 83  LNRCIDHKRRPAGEDLDSVPEP---PDHAPDAVTHIQRRQVAARLRDAQDRLPQQQRAAL 139

Query: 119 VLREAMDLDFADIAAILGKSVATCRQIMSRARAALKGEARFDWDAAQ 165
            L     L  A++A I+  SV     ++ RAR  L+   R    AA+
Sbjct: 140 ALYYNEGLSGAEVATIMQISVTAVESLLKRARQQLRTLLRASAQAAR 186