Pairwise Alignments

Query, 288 a.a., DNA-directed RNA polymerase specialized sigma subunit from Magnetospirillum magneticum AMB-1

Subject, 168 a.a., RNA polymerase sigma 70 from Azospirillum brasilense Sp245

 Score = 50.4 bits (119), Expect = 3e-11
 Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 12/137 (8%)

Query: 25  RLLGSTADAEDVLQDAWLKWSR--GSDGVEEPAAFLTTQVTRLALDRLRKDQRRARLGAQ 82
           R LGS   AEDV+QD +L+         ++ P ++L      +ALDR+R + RR R  A 
Sbjct: 26  RRLGSLCLAEDVVQDTYLRLRSLTALPEIDNPRSYLYRMADNIALDRMRAETRRGRRFAP 85

Query: 83  ---WLPDPWVEPLEPGEADLS-----TGLLLLLERLTPDQRAVYVLREAMDLDFADIAAI 134
               L  P  EP    EA L        L   L+ L P  R V++L +   L  ADIAA 
Sbjct: 86  AELGLDRPLDEP--DAEATLEHKQRLERLSRALDELPPRCREVFLLHKFDGLSHADIAAR 143

Query: 135 LGKSVATCRQIMSRARA 151
           LG S +   + + +A A
Sbjct: 144 LGISRSMVEKHVMKALA 160