Pairwise Alignments

Query, 288 a.a., DNA-directed RNA polymerase specialized sigma subunit from Magnetospirillum magneticum AMB-1

Subject, 197 a.a., RNA polymerase from Azospirillum brasilense Sp245

 Score = 58.5 bits (140), Expect = 1e-13
 Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 13/173 (7%)

Query: 1   MAEGQSPAL-VHFLAQRPRLRLLAYRLLGSTADAEDVLQDAWLK--WSRGSDGVEEPAAF 57
           M +   P L   F+  R  L  L  R++GS A AED+ Q+A+LK   +     VE PA F
Sbjct: 1   MVDAAKPTLDAVFIGHRGALVRLLSRMVGSAATAEDLAQEAYLKVRAAERDRPVEYPAPF 60

Query: 58  LTTQVTRLALDRLRKDQRRARL--------GAQWLPDPWVEP-LEPGEADLSTGLLLLLE 108
           L      LALD LR+++R A +        G + +  P   P  E G+      +   L 
Sbjct: 61  LFQTARNLALDHLRRERRNAVVVTQDITAEGMEAVAAPLPSPETEAGDRQRLARMETALA 120

Query: 109 RLTPDQRAVYVLREAMDLDFADIAAILGKSVATCRQIMSRA-RAALKGEARFD 160
            L+  QR + +L     L  A IA  L  SV+T ++ +  A  A L+  AR D
Sbjct: 121 ALSERQRRILLLNRMEGLSHAQIAERLDVSVSTVQKDLKTALLACLEIFARLD 173