Pairwise Alignments

Query, 288 a.a., DNA-directed RNA polymerase specialized sigma subunit from Magnetospirillum magneticum AMB-1

Subject, 177 a.a., RNA polymerase sigma70 from Azospirillum brasilense Sp245

 Score = 41.2 bits (95), Expect = 2e-08
 Identities = 46/160 (28%), Positives = 65/160 (40%), Gaps = 24/160 (15%)

Query: 12  FLAQRPRLRLLAYRLLGSTADAEDVLQDAWLK--WSRGSDGVEEPAAFLTTQVTRLALDR 69
           F   R  L  +A R+ G    AEDV+QDA+LK   +  +  +   A +L   V  LA+D 
Sbjct: 16  FTTHRRSLIGVAERITGCRHHAEDVVQDAFLKLLGAESTSSIRAKAGYLMMVVRNLAIDH 75

Query: 70  LRKDQRRARLGA-----QWLPDPWVEPLEPGEADLSTGLLLLLERLTPD----QRAVYVL 120
            R+    +RL A     Q +  P  E   P   +++  LL  LE    D     R  + +
Sbjct: 76  YRRKGLESRLMATEEEGQAVSTP--EAASPESVNVNRQLLQTLESALADLPERTRYAFEM 133

Query: 121 REAMDLDFADIAAILGKS-----------VATCRQIMSRA 149
                    DIA  LG S           +  CR+ M RA
Sbjct: 134 HRIHGHSQKDIAETLGVSPTLVNVMIRDALIHCRKAMKRA 173